Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l06
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   3.0  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   5.2  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   5.2  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.9  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   6.9  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   9.1  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   9.1  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 139 RLFCSECIVCFCILFFIVCVGLLLYLFFHLYNTLSADAKIVVES*LKR 282
           RL   E +  F   FF++   LL  L F ++NTL    + VV + +K+
Sbjct: 9   RLKWEEYMALFLGFFFVIFEKLLSCLAFMIHNTLGLFYRSVVRNEIKK 56


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 112 GQINRIDRVRLFCSECIVCFCILFFIVCVGLLLYLFFHLYNTL 240
           G +N +D+  L CS C +   +L F++ V L  +   H+++ L
Sbjct: 196 GNLN-LDKA-LICSTCSISAALLLFLLYVRLPFWTLKHMFSGL 236


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 112 GQINRIDRVRLFCSECIVCFCILFFIVCVGLLLYLFFHLYNTL 240
           G +N +D+  L CS C +   +L F++ V L  +   H+++ L
Sbjct: 174 GNLN-LDKA-LICSTCSISAALLLFLLYVRLPFWTLKHMFSGL 214


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 129 RQSSSLLFRVYCVLLYFILHSMRW 200
           R   S+L  + C   Y +LHS RW
Sbjct: 227 RMQLSILVGIICNFAYGLLHSYRW 250


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 542 FVLKKKCILLQRRTGTLPSTKIIKILHYKMASIFVIDMGCEPQLENP 682
           FVL K C+LL R+  T+P      +   +M+S+ ++ +   P   +P
Sbjct: 222 FVLAKDCVLLARQPETIP------VSFERMSSLLLMCLPSHPDFISP 262


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 238 TCYTNERRGTVTDQRIL*RIKYKSTQ 161
           +C      GT+TDQR L  IK+KS +
Sbjct: 202 SCLLPNSSGTLTDQRGLDTIKHKSIE 227


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 398 NPSRLKNNCVQ*CLKHGCKL-RFDMINFKIVKPITTHTHTRFSQLSTTILASADNVLYK* 222
           N SRL+N  V   L+H   L R  MI+ ++++ +T H H+   Q  + +  S  +V+   
Sbjct: 450 NKSRLENFSVI-LLQHILHLTRQPMISMELLEHLTEHLHSLAQQFPSALGISFISVVEGM 508

Query: 221 KKR 213
           +KR
Sbjct: 509 RKR 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,567
Number of Sequences: 5004
Number of extensions: 61281
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)