Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l06
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39743-4|AAA80438.4|  581|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    31   0.91 
U41034-7|AAN72427.1|  465|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC024805-9|AAK39341.2|  237|Caenorhabditis elegans Hypothetical ...    29   4.8  
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    28   6.4  
AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine ...    28   6.4  
AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine ...    28   6.4  

>U39743-4|AAA80438.4|  581|Caenorhabditis elegans Hypothetical
           protein R173.3 protein.
          Length = 581

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 86  GTIQR*TTRDKSIG*TEFVSSVQSVLCAFVFYSS*YALVCYCT 214
           G IQR    D+ +G  +F +++ S  C+  F++    L CYCT
Sbjct: 531 GNIQRIAQLDRDVGNWQFATAMLS-FCSLFFFAILVGLACYCT 572


>Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical
           protein F49C5.9 protein.
          Length = 376

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 133 RVRLFCSECIVCFCILFFIVCVGL-LLYLFFHLYNTLSADAKIVVES*LKRVCVCVVIGF 309
           RV L+ S  +V    +  ++ +   L+Y F  L    +   KI +E  LKR+ +C V+G 
Sbjct: 107 RVTLYLSSTVVLLYFMPTMLLLSFGLIYNFMSLKQLTTVFFKISIEKLLKRI-ICAVVGI 165

Query: 310 TIL 318
            IL
Sbjct: 166 LIL 168


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 85  WNYSAVDNPGQINRIDRVRLFCSECIVCFC 174
           WNY   D     N  DR  L CS+C V  C
Sbjct: 341 WNYYRTDTYELFNETDRKPLICSQCKVSTC 370


>U41034-7|AAN72427.1|  465|Caenorhabditis elegans Hypothetical
           protein M02D8.4b protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/51 (23%), Positives = 30/51 (58%)
 Frame = +3

Query: 48  VLIMKKNLGRNNVELFSGRQPGTNQ*DRQSSSLLFRVYCVLLYFILHSMRW 200
           +  ++K L +++V++ +   P   +  ++  S++F +   L+ F+L S+RW
Sbjct: 336 LFFLEKELMKSSVDISTSTMPHPMRTFKRKPSIVFFISTHLIVFVLTSLRW 386


>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +1

Query: 181 FFIVCVGLL--LYLFFHLYNTLSADAKI--VVES*LKRVCVCVVIGFTILKF 324
           FFIVC+GLL  ++LFF+L+  L     +  +  + L  + +C  I +++  F
Sbjct: 269 FFIVCLGLLTAIFLFFNLFPQLDTVLNLCFIAVANLPPLVICPAIIYSVDAF 320


>AC024805-9|AAK39341.2|  237|Caenorhabditis elegans Hypothetical
           protein Y51H7C.10 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 88  NYSAVDNPGQINRIDRVRLFCSECIVCFCILFFIVCVGLLLY 213
           N+S       I  I RV ++ +  ++  CIL F++ VG ++Y
Sbjct: 133 NFSDKAAEKSIYSIPRVPVYVAVTVIAACILTFVLLVGTVIY 174


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +1

Query: 64  RTSAAIMWNYSAVDNPGQINRIDRVRLFCSECIVCFCILFFIVCVGLLLYLFFHLYNTLS 243
           R    I+ ++ AVD    + +I R   F +   +CF  + F+     L+Y  F +  ++ 
Sbjct: 186 RVGTLILVSHDAVDILIDVGKILRYEQFETALTICFAGVLFVWVATRLVYYPFWIIRSVW 245

Query: 244 ADAKIVVE 267
            DA  +++
Sbjct: 246 FDAPALIQ 253


>AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform b protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 259 QFWRQPTTCYTNERRGTVTDQRIL*RIKYKSTQYTLNRR 143
           QFWR P   +   RR  V D+ +L ++ +K   Y  N R
Sbjct: 85  QFWRDPRLAHNETRRVLVKDKAVLHKM-WKPDVYFANAR 122


>AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform a protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 259 QFWRQPTTCYTNERRGTVTDQRIL*RIKYKSTQYTLNRR 143
           QFWR P   +   RR  V D+ +L ++ +K   Y  N R
Sbjct: 85  QFWRDPRLAHNETRRVLVKDKAVLHKM-WKPDVYFANAR 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,628
Number of Sequences: 27780
Number of extensions: 339204
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)