Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l06
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.15 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.15 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 283 VCVCVVIG--FTILKFIISNLNLQPCFRHH*TQLFLSLDG 396
           V  CV+ G  F +  F+ +   LQP + HH   ++ SL G
Sbjct: 13  VSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCG 52


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 283 VCVCVVIG--FTILKFIISNLNLQPCFRHH*TQLFLSLDG 396
           V  CV+ G  F +  F+ +   LQP + HH   ++ SL G
Sbjct: 13  VSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCG 52


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 504 TMTSYFTITNSFDST 460
           TM ++FT +N F ST
Sbjct: 339 TMLNFFTTSNGFRST 353


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 504 TMTSYFTITNSFDST 460
           TM ++FT +N F ST
Sbjct: 308 TMLNFFTTSNGFRST 322


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 504 TMTSYFTITNSFDST 460
           TM ++FT +N F ST
Sbjct: 359 TMLNFFTTSNGFRST 373


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 504 TMTSYFTITNSFDST 460
           TM ++FT +N F ST
Sbjct: 308 TMLNFFTTSNGFRST 322


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 109 PGQINRIDRVRLFCSECIVCFCILFFIV 192
           P  I++  R+ +F   C VCF ++++I+
Sbjct: 401 PSDIDKYSRI-VF-PVCFVCFNLMYWII 426


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 109 PGQINRIDRVRLFCSECIVCFCILFFIV 192
           P  I++  R+ +F   C VCF ++++I+
Sbjct: 401 PSDIDKYSRI-VF-PVCFVCFNLMYWII 426


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 109 PGQINRIDRVRLFCSECIVCFCILFFIV 192
           P  I++  R+ +F   C VCF ++++I+
Sbjct: 339 PSDIDKYSRI-VF-PVCFVCFNLMYWII 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,631
Number of Sequences: 438
Number of extensions: 4344
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)