Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29l03
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 33 0.25
05_04_0046 - 17482792-17483124 32 0.43
04_04_1479 - 33888521-33888853 32 0.43
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 29 3.1
01_01_0257 + 2097785-2097797,2098080-2098189,2098299-2098392,209... 29 3.1
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 29 3.1
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 4.0
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 28 9.3
06_02_0037 - 10856616-10856915,10857527-10860238 28 9.3
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021... 28 9.3
01_01_1129 - 8948612-8950117,8951354-8951503 28 9.3
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 489 NKSSMCRFCYQTDKWEHRCEQKANCNSLASPLKYYLTNCTVSDDVICLGKRRFLKK 656
+ + CR C +TD E C + +CNS Y++T + +C G ++F+ +
Sbjct: 53 SSAGCCRICLETDS-ELDCNKYKSCNSTFFVHAYHVTGDELISPCMCKGTQQFVHR 107
>05_04_0046 - 17482792-17483124
Length = 110
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +3
Query: 366 CSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 545
C S + PC +C YG F C V+C G+ + + C+ C Q +K C
Sbjct: 33 CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85
Query: 546 EQKANCNSLASPLKY 590
+ N S + L Y
Sbjct: 86 PKIVNLGSAKTDLFY 100
>04_04_1479 - 33888521-33888853
Length = 110
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +3
Query: 366 CSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 545
C S + PC +C YG F C V+C G+ + + C+ C Q +K C
Sbjct: 33 CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85
Query: 546 EQKANCNSLASPLKY 590
+ N S + L Y
Sbjct: 86 PKIVNLGSAKTDLFY 100
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 231 ANNNMDFHSKENKIKGD-SNDKGVSFSENEEYIKSCPS 341
AN+ D HSKEN +K D S+ G+S + + + P+
Sbjct: 344 ANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSMAPT 381
>01_01_0257 +
2097785-2097797,2098080-2098189,2098299-2098392,
2098786-2098974,2099061-2099120,2099231-2099391
Length = 208
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 609 VSDDVICLGKRRFLKKVRCSWTSG-TRW 689
V+ DVIC G++ FLK R S+ SG T W
Sbjct: 46 VTGDVICHGEKSFLKDGRKSFPSGHTSW 73
>01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 225 DMANNNMDFHSKENKIKGDSNDKGVSFSENE-EYIKSC 335
++ N +D K NK+ GD N K VSF E + SC
Sbjct: 1062 EIKNFALDLGKKLNKVLGDCNYKTVSFDEKSLSFFPSC 1099
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = +3
Query: 312 NEEYIKSCPSVDQENMTECSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFN 491
N E IK+C + + N+ + LY CI RS G K K G +
Sbjct: 458 NSESIKNCNKLHEMNLENRAQALYCCIFLWRSFVKELGFVLGLKPYCKEKCDHDGCTICS 517
Query: 492 KSSMCRFCYQTDK 530
KS + F + + K
Sbjct: 518 KSKLAVFSFSSFK 530
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 108 DGRRNALISNMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKENKIKGDSN 287
+G A++ M++ LRI + D +++ + N+ + ++ +N F + +KGDS+
Sbjct: 2811 EGYLQAMLDVMYKQEYLRIRVIDDQVILKNLPPNSALINEIVDNVKSFLVSKGLLKGDSS 2870
Query: 288 D-KGVSFSENEEYIKSCPSV 344
+ + NE + P+V
Sbjct: 2871 TIRPLRHLRNEPEWRIAPTV 2890
>06_02_0037 - 10856616-10856915,10857527-10860238
Length = 1003
Score = 27.9 bits (59), Expect = 9.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 372 SLLYPCITCNRSIDCRYGGF 431
+++ PCI+C ++C +GGF
Sbjct: 344 AVILPCISCLPIVECLFGGF 363
>02_04_0367 +
22399785-22399899,22400911-22401102,22401990-22402117,
22402229-22402384,22402948-22403206,22403762-22403836,
22404288-22404610,22405041-22405274,22405355-22405542,
22405734-22405869,22405963-22406071,22406988-22407090,
22407188-22407374,22407467-22407565,22407666-22407724,
22408581-22408686,22408798-22408962
Length = 877
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 653 LKEPPLPQTYNIIRYSAIS*IVFER*S*RITICLLFTTMFPFISLIAKSTH*AFVESF*P 474
L P T N++ S I+ + E L+T F + ++A S F+++
Sbjct: 469 LSNMPFKYTMNLLNISVIALFILEFLVMSFFDRKLYTWCFLILGILASSCVAIFIQASSA 528
Query: 473 LTNYFWFHCTCIIIETSISA 414
L Y W C + + T + A
Sbjct: 529 LAVYVWLSCWFLSLFTLMPA 548
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/90 (17%), Positives = 41/90 (45%)
Frame = +3
Query: 219 VTDMANNNMDFHSKENKIKGDSNDKGVSFSENEEYIKSCPSVDQENMTECSSLLYPCITC 398
+ ++ + +D ++ + +K S S++E + Q+ + + + PC C
Sbjct: 114 IEPVSRSTLDNKKEDQGQMNNVEEKAASDSKDENEKTANDESGQDKVLKKPDKILPCPRC 173
Query: 399 NRSIDCRYGGFYNYTCTVKPKVVCQGLKTF 488
N S+D ++ + NY +P+ C+ + +
Sbjct: 174 N-SMDTKFCYYNNYNVN-QPRHFCKNCQRY 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,699
Number of Sequences: 37544
Number of extensions: 338948
Number of successful extensions: 741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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