Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29l03
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 88 7e-18
Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical pr... 33 0.17
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 31 0.89
L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical p... 30 1.6
Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical pr... 28 6.3
U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger pr... 28 6.3
AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily a... 28 6.3
Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical pr... 28 8.3
U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical pr... 28 8.3
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 8.3
U23526-1|AAK95866.1| 252|Caenorhabditis elegans Claudin-like in... 28 8.3
EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfa... 28 8.3
EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfa... 28 8.3
AF252604-1|AAF67350.1| 252|Caenorhabditis elegans Gas3/PMP22-li... 28 8.3
AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan sulph... 28 8.3
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 87.8 bits (208), Expect = 7e-18
Identities = 42/124 (33%), Positives = 61/124 (49%)
Frame = +3
Query: 390 ITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRCEQKANCNS 569
+TC DCR G CT + K + N ++CRFC+Q ++ CE NC++
Sbjct: 38 LTCTFPGDCRIGDTVKVNCTSR-KGCPNPVSRNNVEAVCRFCWQLLPGDYDCEPATNCST 96
Query: 570 LASPLKYYLTNCTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXXDRFYL 749
S K +T C+ VIC+G+R F K++ C+W+SG W DRFYL
Sbjct: 97 --SSTKLLVTKCSAHSSVICMGQRNFYKRIPCNWSSGYSWTKTMILSVVLGGFGADRFYL 154
Query: 750 GHWQ 761
G W+
Sbjct: 155 GLWK 158
>Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical
protein R09E10.6 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 187 KIKQSRMLIRKGRVLCMLEIKAFLLPSNIGILQM 86
K+ +S +L R+GRVLCM+ K F P +I L+M
Sbjct: 30 KVHESDVL-RRGRVLCMIRSKNFFFPDDISSLKM 62
>Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical
protein F14E5.3 protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 291 KGVSFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSI 410
+G +F+ N IK CP ++ N E ++LY C+ N SI
Sbjct: 195 RGCNFTRNSR-IKQCPKTEKVNRDEMYAVLYECMGGNHSI 233
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 31.1 bits (67), Expect = 0.89
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +3
Query: 120 NALISNMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKENKIKGDSNDKGV 299
NA H L D F+ +L V +N + +T M + F ++ + I G+ ND GV
Sbjct: 92 NAWTDTDHTAYTLSTVGSDGFLKVLPVYINHL-LTPMLTASQ-FATEVHHITGEGNDAGV 149
Query: 300 SFSENEEYIKSCPSVDQENMTECSSLLYP 386
+SE +++ S+ E ++YP
Sbjct: 150 VYSEMQDHESEMESIMDRKTKE---VIYP 175
>L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical
protein C02F5.13 protein.
Length = 210
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 429 FYNYTCTVKPKVVCQGLKTFNKSSMC 506
F N C V P + C G +TF KS+ C
Sbjct: 113 FTNVKCRVLPCIECHGPRTFTKSTPC 138
>Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical
protein C06B8.11 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = +3
Query: 246 DFHSKENK--IKGDSNDKGV-SFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSIDC 416
DF N + G +GV ++ + +++ P+ D C S Y C++ I+
Sbjct: 60 DFRCAANSKSLGGHCQIEGVQTYGDKYRFLRGIPAFDCGKNGVCLSSPYYNFCCDKRIED 119
Query: 417 RYGGFYNYTCTVKPKVVCQGLKTF---NKSSMCRFC 515
+Y ++ C KVV G + KS FC
Sbjct: 120 KYNADFDPKCARGTKVVKDGESGYILRGKSCKSNFC 155
>Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical
protein F48F7.5 protein.
Length = 293
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 222 TDMANNNMDFHSKENKIKGDSNDK-GVSFSENEE----YIKSCPSVDQENMTE 365
TD+ +++D + +E ++ +SND F E +E Y++ P+ D+E + E
Sbjct: 231 TDLEGSDVDENREEKELIDESNDSDDTEFEEEDEYETDYVEDEPTFDEETIPE 283
>AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical
protein Y48A5A.1 protein.
Length = 431
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 510 FCY--QTDKWEHRCEQKANCNSLASPLKYYLTNCTVSDDVICLGKR 641
+CY + + WE CE NC L+ L ++ +V + ++ +R
Sbjct: 267 YCYDQRVNDWESACESGWNCAKLSPSLSFFAKFSSVKECLLACTRR 312
>Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical
protein K04H8.2 protein.
Length = 181
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 NMTECSSLLYPCIT-CNRSIDCRYGGFYNYTC 446
N TE + C+T C+ +DC GF N TC
Sbjct: 60 NFTEKTVNWSSCVTNCHNKLDCIVAGFENGTC 91
>U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger
protein protein 1 protein.
Length = 381
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 249 FHSKENKIKGDSNDKGVSFSENEEYIKSCPSVDQENMTECSSLLYPCI 392
F + + I S G SF N E CP D +N++ECS YP +
Sbjct: 262 FGNDNDSISQVSTTSG-SFG-NHENDHFCPFSDDDNISECSDDYYPTL 307
>AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily
assigned gene nameprotein 123 protein.
Length = 655
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = -1
Query: 467 NYFWFHCTCIIIETSISAIYTPVTCY----TRVQ*RGTFSHILLIN*WTTF-YVFFILTK 303
+Y W+ + + + +AIY + C T++ GT S IL + + F ++FF++T
Sbjct: 577 DYHWWWRS--FMTSGFTAIYLFIYCIHFFNTKLTISGTISTILYFSYTSIFVFMFFLMTG 634
Query: 302 TYTFVI*ITFYFI 264
T F+ T+YF+
Sbjct: 635 TIGFLA--TYYFV 645
>Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical
protein K05D4.2 protein.
Length = 338
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 156 LRISIRDCFILILLVIMN 209
LR S+R+CF+ ILLV+ N
Sbjct: 127 LRFSLRNCFLWILLVLSN 144
>U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 429 FYNYTCTVKPKVVCQGLKTFNKSSMCRFC 515
F Y + KP++ C + F+ S CR+C
Sbjct: 27 FRRYVNSKKPQIECTCSQKFDSSGPCRYC 55
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 297 VSFSENEEYIKSCPSVDQENMTECSSLLYPCITCN 401
+++S NE+ I + P + N+ E LY C+ N
Sbjct: 73 ITWSRNEQIISTSPVLTLSNLEEGDKGLYTCLAVN 107
>U23526-1|AAK95866.1| 252|Caenorhabditis elegans Claudin-like in
caenorhabditisprotein 2 protein.
Length = 252
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 129 ISNMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKEN 266
I HR I++ F+ ++ +I++ +HV A N+ S++N
Sbjct: 162 IYEKHRGYSWYIALTGAFVYLVAIILSVVHVLLQARNSNTTMSRQN 207
>EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform b protein.
Length = 249
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 245 HVIISHIGDMYCVHYY**NQNKTVSNAYT*RQSSMHVGNQSISSSIEYRYLTNALYNVMI 66
H + + D V+Y QNKT+ + G + I+ +EY+ +TN+LY+V I
Sbjct: 143 HPVYRTVSDFTQVYYNKLEQNKTLPVLSVEAFKTNEAGIEKIN--MEYKPMTNSLYDVHI 200
>EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform a protein.
Length = 278
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 245 HVIISHIGDMYCVHYY**NQNKTVSNAYT*RQSSMHVGNQSISSSIEYRYLTNALYNVMI 66
H + + D V+Y QNKT+ + G + I+ +EY+ +TN+LY+V I
Sbjct: 143 HPVYRTVSDFTQVYYNKLEQNKTLPVLSVEAFKTNEAGIEKIN--MEYKPMTNSLYDVHI 200
>AF252604-1|AAF67350.1| 252|Caenorhabditis elegans Gas3/PMP22-like
protein protein.
Length = 252
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 129 ISNMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKEN 266
I HR I++ F+ ++ +I++ +HV A N+ S++N
Sbjct: 162 IYEKHRGYSWYIALTGAFVYLVAIILSVVHVLLQARNSNTTMSRQN 207
>AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan
sulphotransferase protein 3 protein.
Length = 276
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 245 HVIISHIGDMYCVHYY**NQNKTVSNAYT*RQSSMHVGNQSISSSIEYRYLTNALYNVMI 66
H + + D V+Y QNKT+ + G + I+ +EY+ +TN+LY+V I
Sbjct: 143 HPVYRTVSDFTQVYYNKLEQNKTLPVLSVEAFKTNEAGIEKIN--MEYKPMTNSLYDVHI 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,644
Number of Sequences: 27780
Number of extensions: 353285
Number of successful extensions: 959
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -