Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29l03
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 567 SLASPLKYYLTNCTVSD 617
           S+ +P  YYL N  VSD
Sbjct: 63  SMQTPTNYYLFNLAVSD 79


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 138 CWKSKHFF 115
           CW S+HFF
Sbjct: 332 CWNSEHFF 339


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 657 VRCSWTSGTRW 689
           VRCS  SG RW
Sbjct: 21  VRCSAASGLRW 31


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 237 NNMDFHSKENKIKGDSNDKGVS 302
           NN+ +  KEN +   ++ KG+S
Sbjct: 289 NNVHYQGKENILWTQASAKGIS 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,523
Number of Sequences: 438
Number of extensions: 4310
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)