Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29k22
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    48   1e-06
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    31   0.23 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   5.0  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   5.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   6.6  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.8  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   8.8  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 11/179 (6%)
 Frame = +2

Query: 248 LIVKHIPKLSKQPKHLVVL----SDSDYHS-IDDLARMVIWSLVAGIPFLSFYDVSGQLS 412
           LI +   KL K+PKH+ V+     D      I D   +  W + + I  L+ Y+  G L 
Sbjct: 48  LIRRDTKKLKKKPKHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKGFLK 107

Query: 413 YQEEKLFNAVEKNKK---GVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQNGRSTI-- 577
              E +  A+  +     G   C      P      N      + V++ + ++GR  I  
Sbjct: 108 QSPEAVEKAIYSHLPFYLGGDKCTVHVTNPCSPDEKNQNDCVDLKVHLIAKEDGRDAIID 167

Query: 578 -TQCIKEMCEEKIPYNRKSDQITAQEFDDVISAVYPSIPDPDLALFSGPVCCTHGLLPW 751
            T+ + ++C +K+     S Q+T +  D  +      IP+PDL +   P+    G  PW
Sbjct: 168 LTRGLADLCTKKVI---SSTQVTLELIDKELKESV--IPEPDLLIIFAPLLKLQGFPPW 221


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = -1

Query: 575 LWNVRSDKKKYSQQFYVQE----CHLYTHSNQVSLTILYTPEH---LSCSSQLH*KVFLL 417
           LW++++DKK   +   V++      L +HS  V  T  ++P++   LSCS     +++ +
Sbjct: 350 LWSIKADKKSLPKSTSVEDSDGSVRLLSHSGPVYGT-TFSPDNKYLLSCSEDASARLWSV 408

Query: 416 DMKVDLIHHK 387
           D K  L+ +K
Sbjct: 409 DTKTALVAYK 418


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 513  FVYPFKSGFFDHFIHPGTP 457
            FV   K  F+ HF+H G P
Sbjct: 1511 FVQDIKKSFYKHFLHSGFP 1529


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 744 NKPCVQQTGPENNAKSGSGMEGYTADITSSNSCAVIWSLFLLYGIFSSHISLIHCVI 574
           N P     G E+N  S S +   T    S +S A +W+L     +   H S +  V+
Sbjct: 88  NSPSYYLFGHESNICSASALNSETIITGSWDSTARVWALGQCKYVLKGHQSSVWAVL 144


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 206 HSLQDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDS 313
           H   +   T + L+ + ++IP +SKQP +L + S S
Sbjct: 537 HKSTNSSATFSRLEELGENIPAISKQPSYLSISSSS 572


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +2

Query: 647 QEFDDVISAVYPSIPDP----DLALFSGPVCCT 733
           Q +D  + AVYP +P P    D+ + S P   T
Sbjct: 469 QNYDSTVPAVYPYMPPPFSGSDMNVMSNPAADT 501


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 488 KPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIKEMCEE---KIPY-NRKSDQITAQEF 655
           +P LNG +  IPA   V  + +   G+STI + +    +    KI   N++ DQIT    
Sbjct: 456 RPILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKILIDNQRLDQITLNSL 515

Query: 656 DDVISAVYPSIP 691
              I  V    P
Sbjct: 516 RKAIGVVPQDTP 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,074
Number of Sequences: 5004
Number of extensions: 63472
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)