Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29k13
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    29   0.84 
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   1.9  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   4.5  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    25   7.9  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 28/92 (30%), Positives = 50/92 (54%)
 Frame = +3

Query: 399 VVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQIQAAQSLRPRLDSLSYLVLN 578
           +V LDL+ N+LT   E+   L + P++  LNL+ N+++            L  L  LVL+
Sbjct: 358 LVSLDLSGNELT---EIPYALGELPQLCSLNLASNKITG---CRTFYHISLSHLQILVLS 411

Query: 579 STYVSWPSVHSLLKALPALEELHLSLNEYSYV 674
             +++  S+ S L+ +P+LE+L +  N  + V
Sbjct: 412 RNHLT--SL-SGLENVPSLEKLDIRDNSITDV 440


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 122 LKSYKIFTVSIFLHKQLITFFSKCAIKDFH 33
           L+ +   T ++   KQ+I FFS   + +FH
Sbjct: 524 LRDFSDLTTTVLTQKQVIPFFSSMELANFH 553


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 396 DVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQIQA-AQSLRPRLDSLSYLV 572
           DV+ + L++N L     V  + +  P++  L+L+ NR+++       S + +L  L  LV
Sbjct: 215 DVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELV 274

Query: 573 L 575
           L
Sbjct: 275 L 275


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 528 AQSLRPRLDSLSYLVLNSTYVSWPSVHSLLKALPAL 635
           A SL    DS  YL + S YV  P  H+L + +PAL
Sbjct: 254 AISLYEGTDSEKYLKI-SKYVENPRSHALAEGVPAL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,150
Number of Sequences: 5004
Number of extensions: 48492
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)