Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29k08
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    28   0.075
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 422 LVDDVKTHGPRHLIYVGVVDLIHETDGRRLEGVMIGKVHAYSPHTTFVWRSW 267
           +++D+K    RH    G+  L+ ETD   +E ++  K     P     W++W
Sbjct: 217 ILEDIKHINTRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPTYLIKWKNW 268


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +3

Query: 267 PGTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPN 377
           P + Y G    +  HLP         +  ++ ++HPN
Sbjct: 368 PTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPN 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,376
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)