Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29k05
(323 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 27 0.53
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 1.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 2.8
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 2.8
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 3.7
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 24 4.9
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 24 6.5
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 24 6.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 23 8.6
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 23 8.6
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 23 8.6
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 27.5 bits (58), Expect = 0.53
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 7 NDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSS--VSFAEFQELFKEYFASEDVNA 180
+ + ++ + S DK E ++ K S ++ +EFQ+++K++F D +A
Sbjct: 4 SQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSA 63
Query: 181 PGNFVF 198
+VF
Sbjct: 64 FAEYVF 69
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 70 AEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGKTSF 213
A A A++ L KG+ +S+ + +E F+S VNA + + G F
Sbjct: 311 AALAEAYEYLEKGEYQLSYDKAKESCLGSFSSPSVNARTHNLVGTFKF 358
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 2.8
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 173 TSSEAKYSLNNSWNSAKETDDLPLDSF*KADAASALSRPKDA*TEENSSLSMDPS 9
+SSE S ++S +S E+ DS + + + S KD+ + NSS S D S
Sbjct: 229 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDS 283
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 2.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 136 QELFKEYFASEDVNAPGNFVFG 201
++LF +F + + PG F FG
Sbjct: 212 EDLFNSFFGDQFFSGPGTFFFG 233
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 91 QKLSKGKSSVSFAEFQELFKEYFASEDVNAP 183
+++ KGK+S S E ++FKEY + ++ P
Sbjct: 682 ERVMKGKTSPS--EMFKMFKEYLSFDEAGLP 710
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.2 bits (50), Expect = 4.9
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 167 SEAKYSL--NNSWNSAKETDDLPLDSF*KADAASALSRPKDA*TEENSSLS-MDPSL 6
+ AK+S N++W+S + + P+ S+ ++ + PKD + ++ LS +PSL
Sbjct: 85 ARAKHSFYFNHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPISTDLSGSNPSL 141
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 251 DHN*DHNQFAILQKLVFPKTK 189
DHN D + LVFPKT+
Sbjct: 232 DHNGDIGDYTTAVTLVFPKTE 252
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 23.8 bits (49), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 257 NTDHN*DHNQFAILQKLV-FPKTKFPGAFTSSEAKYSLNNSWNSAKE 120
N H D ++ +++L+ F KFP S A NNS SA+E
Sbjct: 125 NNRHREDFSRIHDIRELMAFRGYKFPAVDEDSIAVMKPNNSLRSAQE 171
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.4 bits (48), Expect = 8.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 170 SSEAKYSLNNSWNSAKETDDLPLDS 96
SS Y+L NS S+ ET +LP S
Sbjct: 300 SSVITYTLINSVTSSSETTNLPSSS 324
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 8.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 95 SYPKASHLSPSLNSRNCS 148
SYP++ +L P ++ NCS
Sbjct: 351 SYPESFNLGPYMSDPNCS 368
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 23.4 bits (48), Expect = 8.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 173 TSSEAKYSLNNSWNSAKETDDLPLDSF*KADAASALSRPKDA*TEENSS 27
TS A ++S +S E+D + S +D+ S+ S PK SS
Sbjct: 73 TSGHASEHTSSSRSSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSS 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,150,629
Number of Sequences: 5004
Number of extensions: 19855
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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