Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29k05
(323 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36753-1|CAA85340.2| 193|Caenorhabditis elegans Hypothetical pr... 45 1e-05
AY962814-1|AAX81435.1| 189|Caenorhabditis elegans calexcitin 2 ... 45 1e-05
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 29 0.77
M23366-1|AAA28114.1| 170|Caenorhabditis elegans myosin light ch... 27 2.3
M23365-1|AAA28113.1| 170|Caenorhabditis elegans myosin light ch... 27 2.3
AC024089-6|AAK09070.2| 170|Caenorhabditis elegans Myosin light ... 27 2.3
AC024089-5|AAK09069.1| 170|Caenorhabditis elegans Myosin light ... 27 2.3
U00044-7|AAA50675.1| 990|Caenorhabditis elegans Hypothetical pr... 26 5.4
U67955-4|AAB07584.2| 211|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z70753-8|CAA94763.1| 137|Caenorhabditis elegans Hypothetical pr... 25 9.5
>Z36753-1|CAA85340.2| 193|Caenorhabditis elegans Hypothetical
protein T09A5.1a protein.
Length = 193
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Frame = +1
Query: 4 SNDGSIDSEEFSSVYASFGLDKAEAASAFQKLS---KGK--SSVSFAEFQELFKEYFASE 168
S D +D E+ V FG+++ +++ F + + +G+ +S+ +F L+K++F SE
Sbjct: 121 SGDHLVDQAEYVQVLGYFGVNRKDSSHCFDQFAFNHQGQLINSIDKKKFHVLWKQFFHSE 180
Query: 169 DVNAPGNFVFGK 204
D ++PGN++ GK
Sbjct: 181 DPSSPGNWLLGK 192
>AY962814-1|AAX81435.1| 189|Caenorhabditis elegans calexcitin 2
protein.
Length = 189
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Frame = +1
Query: 4 SNDGSIDSEEFSSVYASFGLDKAEAASAFQKLS---KGK--SSVSFAEFQELFKEYFASE 168
S D +D E+ V FG+++ +++ F + + +G+ +S+ +F L+K++F SE
Sbjct: 117 SGDHLVDQAEYVQVLGYFGVNRKDSSHCFDQFAFNHQGQLINSIDKKKFHVLWKQFFHSE 176
Query: 169 DVNAPGNFVFGK 204
D ++PGN++ GK
Sbjct: 177 DPSSPGNWLLGK 188
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 29.1 bits (62), Expect = 0.77
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 14 GPSTARNSLRSTHLLV*TRLKLHQLFRSYPKASHLSPSLNSRNCSKNISLLRM*TPLETL 193
G S A N LRS HL R ++H F P + L P ++ + S ++++ TP+ T+
Sbjct: 800 GASEAANHLRSVHLF--ARPRIHLQFMK-PSTNDLIPITSAPSDSLALAIIPSTTPVTTI 856
>M23366-1|AAA28114.1| 170|Caenorhabditis elegans myosin light chain
2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 4 SNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNA 180
+ DG ID + +YAS G A + + + ++F F LF E D A
Sbjct: 39 NKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGERLTGTDPEA 96
>M23365-1|AAA28113.1| 170|Caenorhabditis elegans myosin light chain
1 protein.
Length = 170
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 4 SNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNA 180
+ DG ID + +YAS G A + + + ++F F LF E D A
Sbjct: 39 NKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGERLTGTDPEA 96
>AC024089-6|AAK09070.2| 170|Caenorhabditis elegans Myosin light
chain protein 1 protein.
Length = 170
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 4 SNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNA 180
+ DG ID + +YAS G A + + + ++F F LF E D A
Sbjct: 39 NKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGERLTGTDPEA 96
>AC024089-5|AAK09069.1| 170|Caenorhabditis elegans Myosin light
chain protein 2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 4 SNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNA 180
+ DG ID + +YAS G A + + + ++F F LF E D A
Sbjct: 39 NKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGERLTGTDPEA 96
>U00044-7|AAA50675.1| 990|Caenorhabditis elegans Hypothetical
protein K04C2.2 protein.
Length = 990
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 103 KGKSSVSFAEFQELFKEYFASEDVNAPGNFV 195
K S+ EFQ LF+ Y + + P NFV
Sbjct: 801 KSMSAGVKTEFQSLFENYLKNVEGKVPSNFV 831
>U67955-4|AAB07584.2| 211|Caenorhabditis elegans Hypothetical
protein C16H3.1 protein.
Length = 211
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 13 GSIDSEEFSSVYASF---GLDKAEAASAFQKLSKGK-SSVSFAEF 135
G++D E+F +YAS G K A F+ + + + +V+F +F
Sbjct: 56 GTVDLEQFQLIYASIFPNGDSKGYAELVFKNIDQNRVGTVTFLDF 100
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 179 AFTSSEAKYSLNNSWNSAKETDDLP-LDSF*KADAASALSRPK 54
AFT+S+A +S A +DD P LD+ + + RPK
Sbjct: 267 AFTTSDAMIDYLHSVTIAPSSDDQPLLDAIANSQSTQPTMRPK 309
>Z70753-8|CAA94763.1| 137|Caenorhabditis elegans Hypothetical
protein F40F9.8 protein.
Length = 137
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 7 NDGSIDSEEFSSVYASFGLD--KAEAASAFQKLSKGKSSVSF 126
+DG I++++ S V SFGL+ + E ++ +K VSF
Sbjct: 6 SDGLIETDDVSHVLRSFGLNPSQTELQLVSEQTAKKNGRVSF 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,245,290
Number of Sequences: 27780
Number of extensions: 106242
Number of successful extensions: 296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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