Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j24
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S... 55 9e-09
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.13
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 28 1.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 2.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 2.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 2.7
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 2.7
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 4.8
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 26 6.3
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 26 6.3
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 8.4
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 8.4
>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 207
Score = 55.2 bits (127), Expect = 9e-09
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +3
Query: 159 LRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQ-LV 335
LR VT L+K E I+ + EA+++AE+LI+ A + + +A + EK+ +
Sbjct: 21 LRNLVTSLVKHESIQTTWAKAKEAQRFAEKLITMA-KRANPQNNRKGLAEGMVFEKETTL 79
Query: 336 HKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNP 467
K+F VLVPR+ YT+++K P ++T++ VLE P
Sbjct: 80 KKVFDVLVPRYNGRRCGYTRLLKLP-PRSTDNAPMGVLEFVDGP 122
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.5 bits (68), Expect = 0.13
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Frame = +3
Query: 78 VSKLRMNIKPEHRRLKNLKGP----EGRIDKLRKTVTGLIKFERIELNINRGDEARQYAE 245
+ KL + E+R LK KGP G++DK K E + I+R +++ +Y +
Sbjct: 1130 IEKLGDVLTDEYRHLKEFKGPYLASNGKVDKHGKAEA----IEWLSKYIDRLNQSLEYDD 1185
Query: 246 RLIS--EAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVLVPRFE 371
+ I+ + + C K +++++ K +V KL +L+P FE
Sbjct: 1186 KNITLKDKLLLLQCLKMLLEVSD----RKLIVEKLRPILLPSFE 1225
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 604 LNWVSLPIFAAISEIFDCL*SYFAASSNTF*IHNLLFGCLTIK-SGYGL 461
L V +P+ + +S+ ++F +S +H L+ GC+T+K GYGL
Sbjct: 381 LRHVYVPLNSFMSKSLSTFFTFFVSSV----LHELVMGCITLKIRGYGL 425
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 204 LNINRGDEARQYAERLISEAIRH 272
LNIN +E YAER + E I+H
Sbjct: 513 LNINVPNEEGDYAERAVPEQIKH 535
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 63 EVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYA 242
EV L+SKL + IKP+ + L+ + + K L+ E I L++ A+QY
Sbjct: 295 EVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALM--EMIVLHLPSPKTAQQYR 352
Query: 243 ERLISEAIRHGDC 281
+ E +C
Sbjct: 353 AETLYEGPMDDEC 365
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 63 EVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYA 242
EV L+SKL + IKP+ + L+ + + K L+ E I L++ A+QY
Sbjct: 295 EVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALM--EMIVLHLPSPKTAQQYR 352
Query: 243 ERLISEAIRHGDC 281
+ E +C
Sbjct: 353 AETLYEGPMDDEC 365
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 437 ICMFSILSFRCFNHFCIRNCRVFKSWN 357
IC F+ +S NH C NCR F + N
Sbjct: 89 ICEFNAVSNSQANHPCCSNCRAFINSN 115
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +1
Query: 256 QKLSVMVTVTNQLWTWPIFGF----LKNSLF--INYSKFWFQDLKTRQFLIQK*LKHLKL 417
Q L +M + W IF F ++ LF + Y+ FW L+T+ QK H K+
Sbjct: 294 QMLYIMYNIVWISWNCGIFSFPRGITQSQLFELMQYTGFWLVQLRTKPLTSQKPDWHYKM 353
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 274 VTVTNQLWTWPIFGFLKNSLFINYSKFWFQDLKTRQF 384
+ + L+ W +F FLKN+ +I + Q L + F
Sbjct: 437 ICIVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLF 473
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 CMFSILSFRCFNHFCIRNCRVFK 366
C IL+ RCFN + +C + K
Sbjct: 88 CHAEILALRCFNRLLLEHCILIK 110
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 6.3
Identities = 35/136 (25%), Positives = 62/136 (45%)
Frame = +3
Query: 123 KNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDM 302
+NLK P G+I K+ K + L +E + RQ+ + S R +D+
Sbjct: 61 RNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSVRQHNLPITSLVSR-------AIDI 113
Query: 303 ANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLI 482
+ F EK+L L L+ + T+ +I +P+ TE+ K++ E + N +P +
Sbjct: 114 SQFKKEEKEL---LSTQLIRFLDTDTI----LIYSPE---TEYEGKLLEEQKENWWP--L 161
Query: 483 VKQPNNRLWIQNVLLD 530
+ N+L +Q LD
Sbjct: 162 KETFENKLGVQLSYLD 177
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 480 IVKQPNNR--LWIQNVLLDAAKYDYRQSKISEIAANIGKDTQL------SSSSLTANNK 632
I + PN + +W Q L+A + Y + +I I ++G+D + S+S+ A NK
Sbjct: 935 ISQYPNLKEIIWCQEEPLNAGAWTYMEPRIYTILKHLGRDLPVRYAGRPPSASVAAGNK 993
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 84 KLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIE 203
KLR NI+ R++N++ + + L + GL++ E +E
Sbjct: 33 KLRSNIQKIEERIENVESSLAKTEILHEDNPGLLEAEGLE 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,804
Number of Sequences: 5004
Number of extensions: 56623
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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