Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j24
         (730 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012306-1|AAH12306.1|  175|Homo sapiens mitochondrial ribosomal...   113   6e-25
AK026857-1|BAB15575.1|  175|Homo sapiens protein ( Homo sapiens ...   113   6e-25
AF164797-1|AAF80761.1|  175|Homo sapiens ribosomal protein L17 i...   113   6e-25
AF141338-1|AAG49441.1|  184|Homo sapiens LYST-interacting protei...   113   6e-25
CR457177-1|CAG33458.1|  175|Homo sapiens MRPL17 protein.              111   2e-24
BC031242-1|AAH31242.1|  446|Homo sapiens coiled-coil domain cont...    31   4.2  
AJ580807-1|CAE45342.1|  529|Homo sapiens mutated in bladder canc...    31   4.2  
AK093476-1|BAC04180.1|  696|Homo sapiens protein ( Homo sapiens ...    30   9.8  

>BC012306-1|AAH12306.1|  175|Homo sapiens mitochondrial ribosomal
           protein L17 protein.
          Length = 175

 Score =  113 bits (272), Expect = 6e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = +3

Query: 135 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 314
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 315 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 494
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 495 NNRLWIQNVLLDAAKYDYRQSK 560
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>AK026857-1|BAB15575.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23204 fis, clone ADSE00191. ).
          Length = 175

 Score =  113 bits (272), Expect = 6e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = +3

Query: 135 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 314
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 315 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 494
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 495 NNRLWIQNVLLDAAKYDYRQSK 560
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>AF164797-1|AAF80761.1|  175|Homo sapiens ribosomal protein L17
           isolog protein.
          Length = 175

 Score =  113 bits (272), Expect = 6e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = +3

Query: 135 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 314
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 315 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 494
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 495 NNRLWIQNVLLDAAKYDYRQSK 560
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>AF141338-1|AAG49441.1|  184|Homo sapiens LYST-interacting protein
           LIP2 protein.
          Length = 184

 Score =  113 bits (272), Expect = 6e-25
 Identities = 60/142 (42%), Positives = 88/142 (61%)
 Frame = +3

Query: 135 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 314
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 30  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 88

Query: 315 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 494
           L EK L+ KLF+VL PR+++ T  YT+M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 89  LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 147

Query: 495 NNRLWIQNVLLDAAKYDYRQSK 560
           ++ L + N LL   + D RQS+
Sbjct: 148 DSHLTLLNQLLQGLRQDLRQSQ 169


>CR457177-1|CAG33458.1|  175|Homo sapiens MRPL17 protein.
          Length = 175

 Score =  111 bits (267), Expect = 2e-24
 Identities = 59/142 (41%), Positives = 87/142 (61%)
 Frame = +3

Query: 135 GPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 314
           GPE RI  LR  +TGL++ ERIE    R DE R YAE+LI    + GD ++  M MA+FW
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79

Query: 315 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 494
           L EK L+ KLF+VL PR+++ T  Y +M++ P  ++ +     V+E +GN  P L + + 
Sbjct: 80  LTEKDLIPKLFQVLAPRYKDQTGGYARMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138

Query: 495 NNRLWIQNVLLDAAKYDYRQSK 560
           ++ L + N LL   + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160


>BC031242-1|AAH31242.1|  446|Homo sapiens coiled-coil domain
           containing 112 protein.
          Length = 446

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
 Frame = +3

Query: 18  IKNKVKEIKITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFER 197
           ++NK+   + T  +A++ + ++K+  N+K    +LK++K     ++KLR+ +      E 
Sbjct: 26  LENKLIHSRKT-ERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMM------EE 78

Query: 198 IELNINR-GDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVL 356
           IE  IN   +E R   E LI E     +         + W L      K F+ +
Sbjct: 79  IENAINTFKEEQRLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAI 132


>AJ580807-1|CAE45342.1|  529|Homo sapiens mutated in bladder cancer
           1 protein.
          Length = 529

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
 Frame = +3

Query: 18  IKNKVKEIKITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFER 197
           ++NK+   + T  +A++ + ++K+  N+K    +LK++K     ++KLR+ +      E 
Sbjct: 109 LENKLIHSRKT-ERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMM------EE 161

Query: 198 IELNINR-GDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVL 356
           IE  IN   +E R   E LI E     +         + W L      K F+ +
Sbjct: 162 IENAINTFKEEQRLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAI 215


>AK093476-1|BAC04180.1|  696|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36157 fis, clone TESTI2025656. ).
          Length = 696

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +3

Query: 420 NTEHTNKIVLELRGNPYPDLIVKQPNNRLWIQNVLLDAAKYDYRQ--SKISEIAANIGKD 593
           NTE ++K  L+   N    +   +P   +  + ++ D  K    +   + SE+ +N  +D
Sbjct: 556 NTESSSKEKLDSNSNCLSSVSAVEPTLMVIKEPIIKDDKKIKSEELSRRGSEVISNTTED 615

Query: 594 TQLSS--SSLTANNK 632
           TQL+S   SLT N K
Sbjct: 616 TQLTSETQSLTGNKK 630


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,558,674
Number of Sequences: 237096
Number of extensions: 1684090
Number of successful extensions: 3247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3237
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)