Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j23
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 107 4e-25
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 107 4e-25
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 0.70
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 2.8
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 2.8
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 4.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 4.9
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 24 6.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 24 8.6
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 24 8.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 24 8.6
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 24 8.6
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 24 8.6
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 107 bits (258), Expect = 4e-25
Identities = 58/109 (53%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Frame = +1
Query: 4 PIKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-VE 180
P+K K FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I+K VE
Sbjct: 68 PLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVE 127
Query: 181 VIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 318
V K RR VKQ N ++FPLP R V FA RPST++
Sbjct: 128 VEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 107 bits (258), Expect = 4e-25
Identities = 58/109 (53%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Frame = +1
Query: 4 PIKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-VE 180
P+K K FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I+K VE
Sbjct: 68 PLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVE 127
Query: 181 VIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 318
V K RR VKQ N ++FPLP R V FA RPST++
Sbjct: 128 VEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 0.70
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 69 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 248
+P P P + +VLQ++ SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127
Query: 249 IAQTCAPLQET 281
+ +P T
Sbjct: 128 SSYAVSPTSPT 138
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 249 WESDGAVVELFDLWTATRSSLDY 181
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 2.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 108 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQH 236
HS R G+ T + + + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 214 VKQFHNSTIRFPLPKRVHHYKRLN 285
+++F FP K+VHHY+ N
Sbjct: 414 LRKFEIQNANFPSVKKVHHYQYPN 437
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -1
Query: 285 IKSLVVVHTFGQWES---DGAVVELFD--LWTATRSSLD 184
I SLV +H +G W++ A+V F+ W A S D
Sbjct: 281 INSLVAIHDYGAWDTVLMGKAIVSSFENLNWEAMLSMFD 319
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 212 RSNSSTTA-PSDSHCPNVCTTTRDLIPSRTRG 304
RSN+ T PS+ NVC +++L S +G
Sbjct: 40 RSNTPTLIDPSNKETANVCPISKNLFQSYPKG 71
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 257 LGNGNLMVLLWNCLTCGRRHAAALITSTLIICI 159
LG+ L++LL+ +T H STL +CI
Sbjct: 1488 LGSRTLLMLLFGTMTVWIPHLIYFWISTLAMCI 1520
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 362 FTWVLLLCDVHYNYKK*VLGLLYAKVLSLL*W 267
FT L D +YN V+GLL + +L + W
Sbjct: 31 FTGKLNFADFYYNTNPFVVGLLLSFILGNVLW 62
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -2
Query: 338 DVHYNYKK*VLGLLYAKVLSLL*WCTRLGNG 246
D Y Y + G + +L ++ W T G+G
Sbjct: 966 DTVYGYLMRIFGTFFGAILGMVIWYTGSGHG 996
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 70 YREYRDLSVGGAVTQCYRDMGARH 141
Y +Y+D+S G V + MGA H
Sbjct: 204 YLKYQDVSTGQLVAEHRTGMGASH 227
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 106 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRR 207
VT+ D+G + + H ++ K+ + +A ACR+
Sbjct: 90 VTRSLHDVGDFEQCKRHLVENGKLFIQRARACRQ 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,520
Number of Sequences: 5004
Number of extensions: 28668
Number of successful extensions: 76
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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