Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j23
(369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal pro... 140 2e-34
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 30 0.45
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 30 0.45
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 24 4.9
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 27 5.5
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 27 5.5
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 27 5.5
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 26 7.3
AL021447-2|CAA16273.2| 807|Caenorhabditis elegans Hypothetical ... 26 7.3
AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical... 26 7.3
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 26 7.3
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 26 9.7
>AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 20 protein.
Length = 180
Score = 140 bits (340), Expect = 2e-34
Identities = 61/106 (57%), Positives = 80/106 (75%)
Frame = +1
Query: 1 SPIKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 180
+P +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+A I I+KV+
Sbjct: 74 NPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQ 133
Query: 181 VIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 318
+KA +R +K FH++ IRFPLP RV K L+ F R +T+F
Sbjct: 134 TVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 30.3 bits (65), Expect = 0.45
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 212 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 358
R SST P+DS C + +TR P +R ++ + H + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 30.3 bits (65), Expect = 0.45
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 212 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 358
R SST P+DS C + +TR P +R ++ + H + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 23.8 bits (49), Expect(2) = 4.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 94 HSGHGIHGTC 65
H GHG HG+C
Sbjct: 285 HGGHGRHGSC 294
Score = 21.4 bits (43), Expect(2) = 4.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 100 HLHSGHGIHGT 68
H H GHG HG+
Sbjct: 253 HGHGGHGGHGS 263
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 203 AVHRSNSSTTAPSDSHCPNVCTTT 274
A N STT+PS S C TTT
Sbjct: 372 AFFAQNISTTSPSSSSCARTTTTT 395
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 141 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 269
QS + ++ +QS N G +G P HH IPI + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 141 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 269
QS + ++ +QS N G +G P HH IPI + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 203 AVHRSNSSTTAPSDSHCPNVCTTT 274
A N STT+PS S C TTT
Sbjct: 372 AFFAQNISTTSPSSSSCARTTTTT 395
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 250 LPKRVHHYKRLNTFAYKR 303
LPKRVHH ++ YKR
Sbjct: 148 LPKRVHHLQKERHLVYKR 165
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 250 LPKRVHHYKRLNTFAYKR 303
LPKRVHH ++ YKR
Sbjct: 148 LPKRVHHLQKERHLVYKR 165
>AL021447-2|CAA16273.2| 807|Caenorhabditis elegans Hypothetical
protein F19B2.6 protein.
Length = 807
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 138 TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 269
+Q +S N D +G +GCCV + P +H C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429
>AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical
protein Y82E9BL.7 protein.
Length = 328
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 7 IKIKNFGIWLRYESR---SGVHNMYR 75
+ +K+FGI LRY S+ S VH Y+
Sbjct: 121 VAVKDFGILLRYASKLHISSVHTCYK 146
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 250 LPKRVHHYKRLNTFAYKR 303
LPKRVHH ++ YKR
Sbjct: 148 LPKRVHHLQKERHLVYKR 165
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 221 SSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNV 334
++TTAP+ + P+ CTTT P+ T+ T+C+ ++
Sbjct: 82 TTTTAPTTTKAPD-CTTT--TAPTTTKAPDCTTCSQDI 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,827,193
Number of Sequences: 27780
Number of extensions: 175660
Number of successful extensions: 534
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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