Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j23
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   2.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   3.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    20   8.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   8.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +3

Query: 108 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPS-TGQTVPQQHH 239
           H   Q YG+  Q P    +  Q     G    PS   Q VP  H+
Sbjct: 22  HQHQQHYGAAVQVPQQTQSVQQQSQQAGDPCDPSLLRQGVPGHHY 66


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 178 EVIKAAACRRP--QVKQFHNSTIRFPLPKRV 264
           ++ KAAA +    +++  H+S+   PLP RV
Sbjct: 201 KLAKAAASKAALAKLRNVHSSSFCIPLPVRV 231


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 106 QLHLHSGHGIHG 71
           Q  LH  HG+HG
Sbjct: 131 QTGLHGLHGLHG 142


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 147 PSSFNTDYQSGSNQGCCVSP 206
           PSS N   +   N GC + P
Sbjct: 91  PSSLNVISEKIGNGGCLLQP 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,185
Number of Sequences: 438
Number of extensions: 2070
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)