Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j22
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 63 2e-10
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019... 61 1e-09
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090... 43 3e-04
02_01_0105 - 775740-776624,777633-778268 35 0.081
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 33 0.25
11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454... 31 1.0
05_03_0674 - 16842301-16842320,16842651-16842714,16842843-168429... 31 1.0
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 30 1.7
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 5.3
10_08_0631 - 19435796-19436452,19437237-19438130 28 7.1
02_04_0576 + 24009297-24009980,24010062-24010376 28 7.1
01_06_0867 - 32586254-32586574,32586756-32587172 28 9.3
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 63.3 bits (147), Expect = 2e-10
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +2
Query: 377 RLSARMLGIRWEVRGLENVDNSRGAVILLNHQSALDLYVLAVIWPLMARCTVVAKRSLQY 556
R+ +LG ++ G+EN+ N+RG + + NH S LD+++ V+W +AK+ + +
Sbjct: 34 RMLMWILGNPIKLEGMENL-NTRG-IFICNHASPLDIFL--VMWLAPTGTVGIAKKEIIW 89
Query: 557 LVPFGTATWLWGTVFIDRGAQSAR-NALNKQAEAIKVHKRKLLLFPEGTRHSGDKLLPFR 733
FG L + I R +A ++ + A A+ + L+LFPE TR +LLPF+
Sbjct: 90 YPLFGQLYVLANHLRIHRSNPAAAIESMKEVARAVTKNNLSLILFPEDTRSKTGRLLPFK 149
Query: 734 KGAFHVAM 757
KG H A+
Sbjct: 150 KGFVHTAL 157
>10_08_0507 +
18401266-18401341,18401448-18401633,18401918-18401953,
18402244-18402650,18402998-18403099,18403206-18403433
Length = 344
Score = 60.9 bits (141), Expect = 1e-09
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Frame = +2
Query: 410 EVRGLENVD-NSRGAVILLNHQSALDLYVLAVIWPLMARCTVVAKRSLQYLVPF-GTATW 583
+V G+EN+ NS AV + NHQS LD+Y L + RC ++ ++ P G A +
Sbjct: 164 DVEGMENLPPNSSPAVYVANHQSFLDIYTLLTL----GRCFKFISKTSIFMFPIIGWAMY 219
Query: 584 LWGTVFIDR-GAQSARNALNKQAEAIKVHKRKLLLFPEGTRHSGDKLLPFRKGAFHVA 754
L G + + R ++S + L + + +K + FPEGTR KL F++GAF VA
Sbjct: 220 LLGVIPLRRMDSRSQLDCLKRCVDLVK-KGASVFFFPEGTRSKDGKLGAFKRGAFSVA 276
>06_03_1367 +
29607008-29607501,29608726-29608906,29609006-29609065,
29609486-29609649,29609723-29609888,29609889-29609957,
29610060-29610155,29610345-29610389,29610765-29610835,
29610996-29611062,29611150-29611200,29611276-29611686
Length = 624
Score = 42.7 bits (96), Expect = 3e-04
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Frame = +2
Query: 371 LLRLSARML----GIRWEVRGLENVDNSRGAVILLNHQSALD-LYVLAVIWPLMARCTVV 535
+ R+SAR + G W R + +++ NH S ++ +Y ++P T+V
Sbjct: 152 ITRISARCILFSFGYHWIRRKGKPAPRELAPIVVSNHVSYIEPIYFFYELFP-----TIV 206
Query: 536 AKRSLQYLVPFGTATWLWGTVFIDRGAQSAR-NALNK-QAEAIKVHKRKLLLFPEGTRHS 709
+ S + GT +++DR + ++R +A+N+ + +A ++LLFPEGT +
Sbjct: 207 SSDSHDSIPFVGTIIRAMQVIYVDRFSPASRKSAVNEIKRKAACNSFPRVLLFPEGTTTN 266
Query: 710 GDKLLPFRKGAF 745
G L+ F+ GAF
Sbjct: 267 GRFLISFQHGAF 278
>02_01_0105 - 775740-776624,777633-778268
Length = 506
Score = 34.7 bits (76), Expect = 0.081
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 284 VLCLTFATAPVPLMLLKPFDPRNALIPAALLRLSARMLGIRWEVRGLENV---DNSRGAV 454
+ L + + LL+ F N +PA L+R + R+ GIR VRG + G++
Sbjct: 252 LFALAYLPVGFAVALLRVF--LNLPVPARLVRHTYRLTGIRLAVRGAPPPPPRPGTPGSL 309
Query: 455 ILLNHQSALDLYVLAV 502
++ NH++ALD ++++
Sbjct: 310 LVCNHRTALDPIIVSI 325
>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 410 EVRGLENVD-NSRGAVILLNHQSALDLYVLAVI 505
+V G+EN+ NS A+ + NHQS LD+Y L +
Sbjct: 1169 DVEGMENLPPNSSPAIYVANHQSFLDIYTLLTL 1201
>11_06_0498 -
24344454-24344660,24344840-24344944,24345324-24345407,
24345523-24345615,24345795-24345920,24347157-24347315,
24347398-24347475,24348316-24348375,24349433-24349555,
24349961-24350041
Length = 371
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 533 VAKRSLQYLVPFGTATWLWGTVFIDRGAQSARNALNKQAEAIKVHKRK--LLLFPEGTRH 706
V K+S ++L G + W +F++R L + +K R L LF EGTR
Sbjct: 79 VMKKSSKFLPVIGWSMWFAEYLFLERSWAKDEKTLKWGLQRLKDFPRPFWLALFVEGTRF 138
Query: 707 SGDKLL 724
+ KLL
Sbjct: 139 TPAKLL 144
>05_03_0674 -
16842301-16842320,16842651-16842714,16842843-16842983,
16843382-16843515,16844437-16844501,16844886-16844923,
16845029-16845148,16846129-16846458
Length = 303
Score = 31.1 bits (67), Expect = 1.0
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +2
Query: 443 RGAVILLNHQSALD-LYVLAVIWPLMARCTVVAKRSLQYLVPFGTATWLWGTVFIDRGAQ 619
R ++ NH S +D LY ++ +P + VAKRS+ L G + G +F+ R ++
Sbjct: 122 RPGAVVSNHVSYVDILYHMSSSFP-----SFVAKRSVARLPMVGLISKCLGCIFVQRESK 176
Query: 620 SARNALNKQAEAIKVHKRKLLLFPEGTRHSGDKLLPFRKGAF 745
++ + + EGT +GD LLPF+ GAF
Sbjct: 177 TS------DFKGVS----------EGTTTNGDYLLPFKTGAF 202
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +2
Query: 452 VILLNHQSALDLYVLAVIWPLMARCTVVAKRSLQYLVPFGTATWLW--GTVFIDRGAQSA 625
V + NH S +D +L M V+ ++ + V F T L G ++ +R
Sbjct: 160 VFVANHTSMIDFIILEQ----MTAFAVIMQKHPGW-VGFIQKTILESVGCIWFNRNDLKD 214
Query: 626 RNALNKQAEAIKVH--KRKLLLFPEGTRHSGDKLLPFRKGAFHV 751
R + K+ H LL+FPEGT + + F+KGAF +
Sbjct: 215 REVVAKKLRDHVQHPDSNPLLIFPEGTCVNNQYTVMFKKGAFEL 258
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 637 QSVTGRLGSSVDEYRTPQPSSCSEGHQVLKRTLCDDSTTRHKWPDHSQHIQIQCA 473
Q + +L VDE + S SE +V ++ + + T H +HS+ +++Q A
Sbjct: 1193 QEINAKL-VKVDELQEKLSSISSEKEEVAEKVVVHEKTIEHLREEHSRGLELQSA 1246
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 311 PVPLMLLKPFDPRNALIPAALLRLSARMLGIR-WEVRGLENVDNSRGAVILLNHQSALDL 487
P PL L P PRN + A+L L + +L W + L ++RG L+ + +
Sbjct: 13 PPPLPLPLPLPPRNCPLATAVLALLSVLLATALWVLLVLSPASHARGPAAGLSDAADAEA 72
Query: 488 YVLA 499
+ +A
Sbjct: 73 FAVA 76
>02_04_0576 + 24009297-24009980,24010062-24010376
Length = 332
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +1
Query: 331 EAVRS*KCTDTGGAVTTVSANVGYPLGSSGSRECGQLTWSCHIAQSSERIGFVCAGCDLA 510
EAV GGAV ++ + LG+ CG + F+CA CD
Sbjct: 2 EAVEDKAMVGVGGAVAAGYSSSSWGLGTRACDSCGGEAARLYCRADG---AFLCARCDAR 58
Query: 511 TYGA 522
+GA
Sbjct: 59 AHGA 62
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 359 IPAALLRLSARMLGIRWEVRGLENVDNSRGAVILLNHQSAL 481
+PAAL R +AR + + R + V S G ++ L HQ +L
Sbjct: 102 VPAALRREAARTVCYEAQARIADPVYGSVGTILALQHQVSL 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,437,337
Number of Sequences: 37544
Number of extensions: 434833
Number of successful extensions: 1174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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