Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j22
(762 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 25 1.0
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 25 1.0
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 24 1.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.1
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.6 bits (51), Expect = 1.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 423 RPRTSQRIPNIRADSRNSAAGISAFLGSNGFSNISGTGAVANVKHSTMNNVNLI 262
R R+ +R + R R+ I + L +N SNIS N N+N I
Sbjct: 60 RERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYI 113
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.6 bits (51), Expect = 1.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 423 RPRTSQRIPNIRADSRNSAAGISAFLGSNGFSNISGTGAVANVKHSTMNNVNLI 262
R R+ +R + R R+ I + L +N SNIS N N+N I
Sbjct: 60 RERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYNINYI 113
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 94 TPEMGKYQNELNKTHSNFDRASGSKAIYI 8
TP +N LNK H +F +GS I++
Sbjct: 179 TPHGWMRRNVLNKQHVHFHDYTGSVVIHV 207
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 199 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 235
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 199 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 235
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 199 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 235
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 199 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 235
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 199 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 235
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 199 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 235
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 267 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 303
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 188 FNVVLGCIMVLLLILFGISSAARYYIKFTLFIVLCLT 298
FN+++ C+++ + L G + K TL + + L+
Sbjct: 267 FNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLS 303
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,018
Number of Sequences: 438
Number of extensions: 4710
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -