Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j15
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 51 1e-07
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 50 5e-07
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 50 5e-07
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 49 6e-07
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 48 1e-06
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 47 2e-06
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 46 4e-06
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 45 1e-05
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 43 4e-05
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 43 4e-05
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 42 1e-04
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 31 0.17
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 31 0.17
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.69
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 27 2.8
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 2.8
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 3.7
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.9
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 6.4
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 6.4
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 8.5
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 8.5
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 51.2 bits (117), Expect = 1e-07
Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Frame = +2
Query: 221 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPIL-ILVARFLAGISGGGLLVMAPIF 397
I G L + GRK I + ++ +IV++++ + ++V RF+ G G ++ P++
Sbjct: 146 IAGALADFFGRKPV-IAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLY 204
Query: 398 ISEIADDSIRGALASSPLFLYCVGVLLSYIIGW-FSTYH----VIIWISLALSVTGVFLF 562
+SEIA IRG L + L G +++Y I F H ++ +++ + +F+
Sbjct: 205 LSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGWRWMVGLAMVPAAFQLFIL 264
Query: 563 LLSTESPIYYMRKQREEDARASIAR 637
+ ESP ++K+R ++A ++AR
Sbjct: 265 IWLPESPRLLVKKERSQEAYNTLAR 289
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 49.6 bits (113), Expect = 5e-07
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Frame = +2
Query: 221 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 394
I+ + +G++N I + ++ I+++++ P + I+VA+ G+ G L V+AP
Sbjct: 75 ISSPTTDRIGKRNSIIGFCVIYLIG-VIIQVTAVPSWVQIMVAKIWTGLGIGALSVLAPG 133
Query: 395 FISEIADDSIRGALASSPLFLYCVGVLLSYII--GWFSTYHVIIW-ISLALSVTGVFLFL 565
+ SE+A IRG + + G+ ++ I G Y W +S+ +++ + L
Sbjct: 134 YQSEVAPPHIRGTIVVTYQLCVTAGIFIAACINMGTHKLYKTAQWRVSIGINLLWGIITL 193
Query: 566 LS----TESPIYYMRKQREEDARASIARYKGLSPASMGVIDELIRIKQQVVPAIE 718
+ +ESP Y + ++++A + + L P S + E +IK A+E
Sbjct: 194 VGVSFLSESPRYLVSIGKDDEAIQVMCKNAELPPDSDIIQTEYKQIKSDCEAAVE 248
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 709 WHNLLLYPYQLINDSHG-SWRQTFVACDRCAGVLFPLFSH 593
W+ L+ + I +S G + F +C+ CA ++ LF+H
Sbjct: 414 WNFLISFFTPFITNSIGFKYGYIFASCNLCASIVTFLFAH 453
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 49.6 bits (113), Expect = 5e-07
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Frame = +2
Query: 302 IVELSSSPILILVARFLAGISGGGLLVMAPIFISEIADDSIRGALASS-PLFLYCVGVLL 478
+V S + I+V + G++ G L V++P + SE+A IRGA+ S+ LF C ++
Sbjct: 103 LVTAVPSWVQIMVGKLFTGLTIGALSVLSPGYQSEVAPPQIRGAVVSTYQLFQTCGTLIA 162
Query: 479 SYI-IGWFSTYHVIIW-ISLALSVT-GVFLF---LLSTESPIYYMRKQREEDARASIARY 640
+ I +G W S +++ G+FL L ESP Y + K R+E+A + +
Sbjct: 163 ACINMGTHKLRKTASWRTSFGINILWGIFLMVGVLFLPESPRYLIYKGRDEEALRIMCQT 222
Query: 641 KGLSPASMGVIDELIRIKQQV 703
L P S + IK +
Sbjct: 223 AELDPESEIIQTNFNTIKSDI 243
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 49.2 bits (112), Expect = 6e-07
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Frame = +2
Query: 302 IVELSSSP--ILILVARFLAGISGGGLLVMAPIFISEIADDSIRGALASSPLFLYCVGVL 475
IV++++ P + I+VA+ GI G L V+AP + SE A SIRG + + G+
Sbjct: 105 IVQVTAVPSWVQIMVAKIWTGIGIGALSVLAPGYQSETAPPSIRGTVVVTYQLFVTGGIF 164
Query: 476 LSYIIGW-------FSTYHVIIWISLALSVTGVFLFLLSTESPIYYMRKQREEDARASIA 634
++ I + + V I I+L + + L ESP Y ++ ++E+A ++
Sbjct: 165 IAACINMGTHKLHKTAQWRVSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLS 224
Query: 635 RYKGLSPASMGVIDELIRIKQQV 703
L P S V +E R+K +
Sbjct: 225 ESAELFPDSEEVQNEYHRLKSSI 247
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 48.4 bits (110), Expect = 1e-06
Identities = 37/152 (24%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Frame = +2
Query: 221 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 394
++ L++ +G++ + T+ ++ I+++++ P + I+VA+ G+S G L V+AP
Sbjct: 75 LSSPLMDRIGKRTSIMFWTIVYLIG-IILQVTAVPSWVQIMVAKIWTGLSIGALSVLAPG 133
Query: 395 FISEIADDSIRGALASSPLFLYCVGVLLSYII--GWFSTYHVIIW-ISLALSVT-GVFLF 562
F SE+A +RG + ++ G+ ++ I G + W +S+ +++ G+ F
Sbjct: 134 FQSEVAPADLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWRVSMGINLLWGIITF 193
Query: 563 L---LSTESPIYYMRKQREEDARASIARYKGL 649
+ ESP Y + R+E+A +A+ L
Sbjct: 194 IGISFLPESPRYLISVGRDEEALQIMAKNNDL 225
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 47.2 bits (107), Expect = 2e-06
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Frame = +2
Query: 302 IVELSSSPILILVARFLAGISGGGLLVMAPIFISEIADDSIRGA-LASSPLFLYCVGVLL 478
+V S I +LV + LAG+ G L V++P + SE+A IRGA +A+ +F ++
Sbjct: 103 LVTAVPSWIQVLVGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFSTGAALVA 162
Query: 479 SYI-IGWFSTYHVIIW-ISLALSVT-GVFLF---LLSTESPIYYMRKQREEDARASIARY 640
+ I +G W S +++ G+ L L ESP Y + K R+E+A +
Sbjct: 163 ACINMGTHKLRKTASWRTSFGINMLWGILLMVGVLFLPESPRYLIYKGRDEEALRIMCNM 222
Query: 641 KGLSPASMGVIDELIRIKQQV 703
LSP S + IK +
Sbjct: 223 AELSPESEIIQTNFNTIKSDI 243
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 46.4 bits (105), Expect = 4e-06
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Frame = +2
Query: 290 LSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPIFISEIADDSIRGALASSPLFLYC 463
++ IV+L++ P + ++VA+ G+ G L V+AP + SE + IRGA+ ++
Sbjct: 97 ITGVIVQLTTIPSWVQMMVAKIWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFIT 156
Query: 464 VGVLLSYIIGW----FST-----YHVIIWISLALSVTGVFLFLLSTESPIYYMRKQREED 616
+G+ ++ I ++T + V I I+L + F L ESP Y K R E+
Sbjct: 157 LGIFIAACINMGTHKYTTHPEAQWRVPIGINLLWGILMFFGMLFLPESPRYLAVKGRNEE 216
Query: 617 ARASIARYKGLSPASMGVIDE 679
+ R GL PA ++ +
Sbjct: 217 CMKILTRNAGL-PADHPIMQK 236
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 44.8 bits (101), Expect = 1e-05
Identities = 33/142 (23%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Frame = +2
Query: 221 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 394
++ L++ +G++ + T+ ++ I+++++ P + I+VA+ G++ G L V+AP
Sbjct: 75 LSSPLMDRIGKRVSIMFWTIVYLIG-IILQVTAVPSWVQIMVAKIWTGLAIGALSVLAPG 133
Query: 395 FISEIADDSIRGALASSPLFLYCVGVLLSYII--GWFSTYHVIIW-ISLALSVT-GVFLF 562
F SE+A ++RG + ++ G+ ++ I G + W +S+ +++ G+ +F
Sbjct: 134 FQSEVAPATLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWRVSMGINLLWGIIMF 193
Query: 563 L---LSTESPIYYMRKQREEDA 619
+ ESP Y + ++E+A
Sbjct: 194 IGISFLPESPRYLIAIGKDEEA 215
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 709 WHNLLLYPYQLINDSHG-SWRQTFVACDRCAGVLFPLFSH 593
W L+ + I+DS G + F AC+ CA + LF+H
Sbjct: 414 WGFLITFFTPFISDSIGFKYGYIFAACNLCAACIIFLFAH 453
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 43.2 bits (97), Expect = 4e-05
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 6/161 (3%)
Frame = +2
Query: 224 TGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFIS 403
+G L + +GRK + V+ I+ S + +++V RF+ G G ++ P++I+
Sbjct: 140 SGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYIT 199
Query: 404 EIADDSIRGALASSPLFLYCVGVLLSYII-GWFSTYH----VIIWISLALSVTGVFLFLL 568
E+A +RG L + G L++Y + F H ++ I A ++ +
Sbjct: 200 ELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFW 259
Query: 569 STESPIYYMRKQREEDARASIAR-YKGLSPASMGVIDELIR 688
+ ESP Y +R E ++R + PA + LI+
Sbjct: 260 TPESPRYLLRHNHVEKVYKILSRIHPEAKPAEIAYKVSLIQ 300
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 43.2 bits (97), Expect = 4e-05
Identities = 33/144 (22%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Frame = +2
Query: 221 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 394
++ + + +G++ IV T ++ I+++++ P + ILVA+ G+S G L V+ P
Sbjct: 43 LSSPVADKIGKRLSIIVWTTVYLIG-IIIQVTTVPSWVQILVAKIWTGLSIGALSVITPG 101
Query: 395 FISEIADDSIRGALASSPLFLYCVGVLLS---------YIIGWFSTYHVIIWISLALSVT 547
+ SE+A +RGA+ ++ +G+ ++ Y G + + + I I+L +
Sbjct: 102 YQSEVAPAIMRGAIVTTYQLFITLGIFIAACINMGTHKYSHGTTAQWRISIGINLLWGII 161
Query: 548 GVFLFLLSTESPIYYMRKQREEDA 619
+ + ESP Y + ++++A
Sbjct: 162 TLVGIIFLPESPRYLIAIGKDDEA 185
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 41.5 bits (93), Expect = 1e-04
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Frame = +2
Query: 227 GTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISE 406
G N LGRK + F +L + S + I ++V R + G+ GGG++ + I IS+
Sbjct: 152 GVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISD 211
Query: 407 IADDSIR----GALASSPLFLYCVGVLLSYIIGWFSTYHVIIWISL-----ALSVTGVFL 559
I R G LA++ G ++ I +T+ I +I+L A ++ VFL
Sbjct: 212 ITPLRTRPMYSGILATAWGAALVAGPIIGGAICQRTTWRWIFFINLPSGGIATALIVVFL 271
Query: 560 FLLSTE 577
LL E
Sbjct: 272 HLLPCE 277
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 31.1 bits (67), Expect = 0.17
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +2
Query: 227 GTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISE 406
G L + GR+ + L +S S + +AR LAGI GGGL M+ I S+
Sbjct: 87 GRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGIGGGGLGTMSSIISSD 146
Query: 407 IADDSIRGALASSPLFLYCVGVLLSYIIG 493
I RG ++ +G L +G
Sbjct: 147 IVSLRERGTWQGITNIVWGIGGSLGGPLG 175
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 31.1 bits (67), Expect = 0.17
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = +2
Query: 260 GGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISEIADDSIRG--- 430
G ++ +FN+ L+ + + + RFLAG + + IS++ RG
Sbjct: 118 GNVIFIVFNMACG----LARTKAQMYIFRFLAGFGSATPMGLGSGTISDLFTPDERGKAV 173
Query: 431 -ALASSPLFLYCVGVLLSYIIGWFSTYHVIIWISLALSVTGVFLFLLS 571
++ +PL +G ++S I ++TY I W + ++ F+F LS
Sbjct: 174 AVMSLAPLLGPTIGPVVSGFIAEYTTYKWIFW---STTIFSGFIFALS 218
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 332 ILVARFLAGISGGGLLVMAPIFISEIADDSIRGALASSPLFLYCVGVLLSYIIGWF 499
++ AR +AGI GGG+ I +S+I RG + +G L +G +
Sbjct: 180 LVAARAIAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVGGY 235
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 184 AQERRVSFTEWRRQR-GQLGLEELRRVRRPDVGEAHQK*TVATRKRSEHLIQFSFHFHQQ 8
A R++ F++ + R G++ LR++ +V + T+A K EH+I + HQ+
Sbjct: 601 ASPRKLIFSDLPKTRSGKIMRRILRKILAGEVDQIGDLSTLADPKVVEHIIHAVHYAHQK 660
Query: 7 K 5
K
Sbjct: 661 K 661
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +2
Query: 248 GRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISEIADDSIR 427
GRK G +V ++L S S I+ RF AG+ G +V + ++++ + R
Sbjct: 120 GRKIGVLVPFFLSILFTIGTASSDSVAAIMCTRFFAGLFAGAPVVSSGGVMADLWCPAQR 179
Query: 428 GALASSPLFLYCVGVLLSYIIGWFSTYH 511
G F G II T H
Sbjct: 180 GTALIFYAFFVVSGADFGPIISSLVTEH 207
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 414 SAISDINIGAITSKPPPEIPARNLATRISIGDELSSTMVHDKTLNR 277
+A+S N G + +P P P N+ TRI I + S + + +NR
Sbjct: 626 TAVSS-NSGQSSGRPGPLSPNLNVTTRIDIKGKKGSMHLQPRDVNR 670
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 303 MVHDKTLNRVKTIPPF---FLPRLLISVPVMAVPSIAPNDGRLPRRD 172
++H T N T F FL L IS+PV +P+IAP LP +
Sbjct: 380 VMHIPTTNSPLTPQSFTNSFLGYLPISMPVANMPAIAPISVALPENN 426
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 277 SVQCFIMDHSGTKFITDTDPGCEVPSRNL 363
S + F+MD+ GT DP VPS+ L
Sbjct: 563 SKRLFMMDYDGTLTPIVRDPNAAVPSKKL 591
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 253 KKWWNRFNSVQCFIMDHSGTKFITDTDPG 339
K W R S F +H ++ + +DPG
Sbjct: 228 KNWKTRIYSFSVFFPEHMDSRVLVQSDPG 256
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 70 FTFDGLHQRLAFVHDGALQVRADPAVGAIQ*NSRV 174
+ +D LHQ GA V +DP G+I N+ +
Sbjct: 832 YWWDVLHQSFGVKLTGATSVASDPLKGSISKNASI 866
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 356 RLGTSQPGSVSVMNLVPLWSMIK 288
+LG S+ G+++V + PLW +K
Sbjct: 127 KLGLSRAGAIAVQDDSPLWKYLK 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,774
Number of Sequences: 5004
Number of extensions: 71328
Number of successful extensions: 238
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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