Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j15
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 211 RNSHNRNADQQSGQKKWWNRFN 276
           +N+ N+NA++Q+G ++  NR N
Sbjct: 445 QNADNQNANKQNGNRQNDNRQN 466


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 381 TSKPPP-EIPARNLATRISIGDELSSTMVHDKTLNRVKTIP 262
           T +PPP E  +  L  RI+ G+   +T         VK+IP
Sbjct: 122 TKEPPPWETDSYKLIGRIAAGEGRFNTNTEVVINTEVKSIP 162


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 461 CVGVLLSYIIGWFSTYHVIIWISLALSVTGVFL 559
           C+ +LLS  + +     +I   SLAL + G +L
Sbjct: 270 CINILLSQTMFFLLISEIIPSTSLALPLLGKYL 302


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 343 EVPSRNLRWGFAGDGPNI 396
           EVP  NL WG    G ++
Sbjct: 179 EVPQINLEWGEGSSGDDL 196


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 526 KLSFERDRSFSLFVEYRESYLLHEKTKGRGRPRIYR 633
           + S  R+R  + +   RE     E +KGR R R  R
Sbjct: 260 RYSRSREREQNSYKNEREYRKYRETSKGRSRDRTER 295


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 526 KLSFERDRSFSLFVEYRESYLLHEKTKGRGRPRIYR 633
           + S  R+R  + +   RE     E +KGR R R  R
Sbjct: 271 RYSRSREREQNSYKNEREYRKYRETSKGRSRDRTER 306


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 700 LLLYPYQLINDSHGSWRQTFVACD 629
           LL+ P  L+ +  G+W    + CD
Sbjct: 92  LLVMPMALLYEISGNWSFGTIMCD 115


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +1

Query: 250 QKKWWNRFNSVQCFIMDHSGTK 315
           ++ WW R+  +    +  SGT+
Sbjct: 73  KRPWWERYQPISYKWITRSGTR 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,021
Number of Sequences: 438
Number of extensions: 5360
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)