Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j06
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626...    27   3.0  
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919...    26   6.9  
01_01_0361 + 2838979-2841745,2841897-2842285                           26   6.9  

>07_01_0795 -
           6257985-6258149,6258276-6258380,6259196-6259328,
           6260225-6260289,6260569-6261642,6262328-6262433,
           6262872-6263044,6263352-6263765
          Length = 744

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 229 KTGNLFYKLIFYYDKIKYLTITDAQVTSSMLFHCL 125
           K G  + K I Y++ +K   +T    T +++ HCL
Sbjct: 282 KNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCL 316


>10_08_0252 -
           16191136-16191279,16191639-16191750,16191833-16191924,
           16192564-16192641,16192764-16192796,16193712-16193771,
           16193912-16193999,16194155-16194180
          Length = 210

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 199 FYYDKIKYLTITDAQVTSSMLFHCLFNTLPG 107
           FY  K+ ++   D   TS++ FH L    PG
Sbjct: 158 FYQKKMIWILCNDCGATSNVNFHVLAQKCPG 188


>01_01_0361 + 2838979-2841745,2841897-2842285
          Length = 1051

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 208  KLIFYYDKIKYLTITDAQVTSSMLFHCLFNTL 113
            + I+ +++ K   ITDA +T S++  CL + L
Sbjct: 981  RTIWLHEEAKNKDITDASITRSIVQDCLVSVL 1012


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,017,984
Number of Sequences: 37544
Number of extensions: 54945
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)