Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j06
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine re...    27   3.5  
U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical ...    25   8.1  

>AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein40 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 102 QLPGNVLNKQWKSIELVTCASV--IVKYLILS**NINL*NKLPV 227
           ++P NV+ + W ++ + T  SV  + ++++LS   IN  N + +
Sbjct: 187 EVPNNVIKRTWIAVAICTSISVLTVTQFIVLSRMIINKLNSMSI 230


>U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical
           protein T01D1.7 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 160 AQVTSSMLFHCLFNTLPGNC 101
           +Q+ S+ LF  LFN L GNC
Sbjct: 75  SQLNSTSLFFGLFNNLFGNC 94


>AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical
           protein K02E7.4 protein.
          Length = 233

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 199 FYYDKIKYLTITDAQVTSSMLFH 131
           FY  KIK+L    A  +SS L+H
Sbjct: 208 FYRPKIKFLNFYVASFSSSFLYH 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,739,255
Number of Sequences: 27780
Number of extensions: 59656
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)