Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j02
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 2.2
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 2.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.2
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 27 2.9
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 26 5.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.0
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 26 5.0
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 26 6.6
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 8.8
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 25 8.8
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +3
Query: 171 DLGIKPLDPLHISVING----NQG--GLELTFKDTIVRGLSGCHVEGVKNDPAKKKQAVT 332
+L I L P+H ++I+ N G G K T+V+ +SG H KN+ ++ +T
Sbjct: 4 NLDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNE---LERNIT 60
Query: 333 IKCSVTLTGDYKLSGK 380
IK YK S +
Sbjct: 61 IKLGYANAKIYKCSNE 76
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 546 FQFENLFNGNKVLATPVEEFVNSNW 620
F ++ N N + TPVE VNS W
Sbjct: 196 FLYDFTGNANNTVVTPVETAVNSRW 220
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 342 SVTLTGDYKLSGKLLVLPIEGEGKYNIKIRDIVIKTANDLVTVTGADGKPHWHIESWKH- 518
SVT TG K ++ G G + + ++ +ND +T+TG G+ + WK+
Sbjct: 112 SVTTTGLPKFKN---IVDCTGAGDVDTSV-EVAAADSNDYLTITGRSGRTLKLSKEWKNP 167
Query: 519 TYEVKTGAHFQFE 557
+ + K G +E
Sbjct: 168 SKKWKVGCKLAYE 180
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 399 EGEGKYNIKIRDIVIKTANDLVTVTGADGKPHW 497
E + N ++ AN V++ G DG P+W
Sbjct: 143 EARSRANSRVNSRANSRANSSVSLAGMDGSPNW 175
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +3
Query: 396 IEGEGKYNIKIRDIVIKTANDLVTVTGADGKPHWHIESWKHTYE 527
IE Y++ I + +DL+ HW +W +TY+
Sbjct: 392 IEQLQSYSVLINQAIGDAISDLLATISVLNALHWDASAWSNTYK 435
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 297 KNDPAKKKQAVTIKCSVTLTGDYKLSGKLLVLPIEGEGKYNIKIRD 434
+ +PA+ QA+ IK + + K+SGK+ P+E K KIR+
Sbjct: 411 RRNPARVNQALKIKKPIDMEEYSKVSGKVF-RPVEEMEKELQKIRE 455
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 546 NELQSSLRTCASTTRYASVACRQLLSLSPD 457
NEL +LR+ +ST+ +A QLL LS D
Sbjct: 1023 NELGPNLRSDSSTSHFAFDLAHQLLLLSRD 1052
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 304 SFLTPST*QPLKPRTMVSLKVNSSPPWFPL 215
SFL P T P+K + + L ++PPW P+
Sbjct: 902 SFLAPQT--PVKSKHALPLVEANAPPWEPI 929
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 231 GLELTFKDTIVRGLSGCHVEGVKNDPAKKKQAVTIKCSV 347
G+++ K TI+ ++G HVE + P K +K +V
Sbjct: 225 GMDVARKVTILSRIAGVHVESASSFPVKSLIPEPLKSAV 263
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 8.8
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 171 DLGIKPLDPLHISVINGNQGGLELTFKDTIVRGLSGCHVEGVKNDPAKKKQAVTIKCSVT 350
D+ I+ P H+ G+ G + +T +DTI+ +G HV+ ND ++ + V ++T
Sbjct: 337 DVSIEKAQPHHL----GSCGSVTVTKEDTIIMKGAGDHVK--VNDRCEQIRGVMADPNLT 390
Query: 351 LTGDYKLSGKLLVL 392
KL +L L
Sbjct: 391 EYEKEKLQERLAKL 404
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +3
Query: 189 LDPLHISVINGNQGGLELTFKDTIVRGLSGCHVEGVKNDPAKKKQAVTIKCSVTLTGD 362
L PL + GGL K ++ G GC + AK+ QA I SV L D
Sbjct: 106 LFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTD 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,102
Number of Sequences: 5004
Number of extensions: 69413
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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