Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29j02
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0070 + 19802893-19803026,19803054-19803816 30 1.7
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615... 30 1.7
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807... 29 3.0
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 29 5.2
01_05_0242 + 19828521-19829252 29 5.2
05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896 28 6.9
04_01_0208 + 2596110-2596928 28 6.9
03_05_0048 + 20258561-20259346 28 6.9
09_04_0505 + 18183203-18183294,18183388-18183436,18183719-181840... 28 9.2
03_04_0213 - 18679114-18679722 28 9.2
02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313... 28 9.2
02_02_0357 + 9360108-9360754,9363732-9364137 28 9.2
02_02_0355 + 9312814-9313650 28 9.2
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317... 28 9.2
>11_06_0070 + 19802893-19803026,19803054-19803816
Length = 298
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 626 RDAGSSPAHRPVHRVRGGGCCRCPVQGCAGRRTL 727
R +G A R R RGGGC G AGRRT+
Sbjct: 174 RASGGHRAKRRAGRGRGGGCDAGEGDGTAGRRTV 207
>08_02_0744 -
20659326-20659580,20659748-20660005,20660103-20661575,
20661677-20661835,20661948-20662074,20662155-20662486,
20662574-20663383,20663772-20664110,20664187-20664340,
20664427-20665143,20665699-20665967
Length = 1630
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 485 AVSSCHCHQIV-CSLDHDVSYFDIVFSFAF 399
A SC H+I CSLDHD+ D+V + +
Sbjct: 629 ATESCKGHKIFPCSLDHDIRTSDMVMQYQY 658
>02_04_0084 -
19579104-19579230,19580323-19580417,19580578-19580719,
19581155-19581189,19581493-19581632,19581678-19581770,
19584007-19584244
Length = 289
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 671 GHDGPDDGRGYFLHHVLPV*VHKFFDGSCQHLVSIKQILKLEMSSSLH--FVRVLP 510
GH GP+D + Y LH +PV F S + ++ I+ L SS +H FV + P
Sbjct: 154 GH-GPEDDKYYLLHFTIPVLAANAFHHSWT-VKAMLHIISLICSSEIHVLFVYLCP 207
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 494 VWLAVSSCHCHQIVCSLDHDVSYFDIVFSFAFNG 393
V LA+S C + V H FD++F+F F G
Sbjct: 561 VCLAISGAICVRYVLPQKHSFCDFDMIFTFVFAG 594
>01_05_0242 + 19828521-19829252
Length = 243
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 623 GRDAGSSPAHRPVHRVRGGGCCRCPVQGCAGRRT 724
GR +G P R R RGG C G AGR T
Sbjct: 134 GRVSGDFPVKRRRSRGRGGSCDVADGDGTAGRHT 167
>05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896
Length = 373
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 33 FLYLFALVLGVKSASAPFITPCKVGDSA 116
F++LFA VL + SAS+P + D+A
Sbjct: 7 FIWLFASVLSISSASSPLLINGSTADAA 34
>04_01_0208 + 2596110-2596928
Length = 272
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 644 PAHRPVHRVRGGGCCRCPVQGCAGRRT 724
PA R R RGGGC G AGRR+
Sbjct: 111 PAKRRADRGRGGGCEAEGEDGAAGRRS 137
>03_05_0048 + 20258561-20259346
Length = 261
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 623 GRDAGSSPAHRPVHRVRGGGCCRCPVQGCAGRRT 724
GR +G PA R R RGG C G GRR+
Sbjct: 124 GRVSGDFPAKRRSDRGRGGSCEAEGGDGATGRRS 157
>09_04_0505 +
18183203-18183294,18183388-18183436,18183719-18184003,
18184914-18185135,18185272-18185421
Length = 265
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 632 AGSSPAHRPVHRVRGGGCCRCPVQGCAGRRTLLAVN 739
A + H P R+RGGG P A R L AV+
Sbjct: 2 AEKAVGHGPRTRIRGGGLAAAPTAPSAAARRLSAVS 37
>03_04_0213 - 18679114-18679722
Length = 202
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 623 GRDAGSSPAHRPVHRVRGGGCCRCPVQGCAGR 718
GR +G PA R R RG GC G AGR
Sbjct: 80 GRVSGGFPAKRRRRRGRGSGCDAGGDDGTAGR 111
>02_05_1165 +
34630369-34630431,34630771-34630855,34631212-34631332,
34631588-34631831,34631922-34632026,34632110-34632154,
34632243-34632395,34632481-34632762,34632844-34632980,
34633065-34633152
Length = 440
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 340 HLMVTACFFLAGSFLT 293
H+ TAC+F+AGSF T
Sbjct: 227 HMEFTACYFMAGSFRT 242
>02_02_0357 + 9360108-9360754,9363732-9364137
Length = 350
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 623 GRDAGSSPAHRPVHRVRGGGCCRCPVQGCAGR 718
G +G P +R R RGGGC G AGR
Sbjct: 185 GHRSGDFPTNRRWRRGRGGGCDAGGGDGTAGR 216
>02_02_0355 + 9312814-9313650
Length = 278
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 623 GRDAGSSPAHRPVHRVRGGGCCRCPVQGCAGR 718
G +G P +R R RGGGC G AGR
Sbjct: 205 GHRSGDFPTNRRWRRGRGGGCDAGGGDGTAGR 236
>01_04_0102 +
16030094-16030462,16030595-16030714,16031715-16031792,
16032760-16032933,16033844-16033921,16034338-16034510,
16034757-16034912,16036460-16036621,16036815-16036826,
16036947-16036962,16037663-16037875
Length = 516
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 139 RQCRSWPPAFPTWASSPWTRY 201
R C SW P FPT SS W Y
Sbjct: 463 RDC-SWHPYFPTLVSSSWDGY 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,546,796
Number of Sequences: 37544
Number of extensions: 527456
Number of successful extensions: 1588
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -