Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j02
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    29   2.7  
AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    28   6.2  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 514 FHDSICQCGLPSAPVTVTRSFAVL-ITMSRILILYFP 407
           +H+ I   G PS+ V  TRS   L I+M R+   Y P
Sbjct: 81  YHNLIFYLGFPSSNVDATRSMVSLAISMERVAAAYIP 117


>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 529 TSYVCFHDSICQCGLPSAPVTVTRSFAVL-ITMSRILILYFP 407
           +S+   +  +   GLP + ++  R+F VL I M R+L  Y P
Sbjct: 69  SSFFISNSDLFWLGLPFSNISAARTFIVLIIVMDRLLATYLP 110


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = -3

Query: 509  RLDMPVWLAVSSCHCHQIVCSLDHDVSYFDIVFSFAFNGKHQQFTAKFVITS*RHGAFDG 330
            R+ +P    VSS H +    + D   + F  VF    + + Q  T   ++ + R+G  + 
Sbjct: 904  RIRVPELFPVSSFHIYADKSTDDKLTNQFMEVFKSIASNEPQSSTTHCIVKTSRNGTLET 963

Query: 329  DRLLLFGWIVFNTFHV 282
            D L    WI   T  V
Sbjct: 964  DSLESLLWIFNGTIIV 979


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,538
Number of Sequences: 27780
Number of extensions: 417774
Number of successful extensions: 1113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)