Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j02
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    65   8e-13
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 64.9 bits (151), Expect = 8e-13
 Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 9/198 (4%)
 Frame = +3

Query: 162 GIPDLGIKPLDPLHI-SV-INGNQGGLELT--FKDTIVRGLS-GCHVEGVKNDPAKK-KQ 323
           G+    I P++PL + SV I  +QG + L   +K+  + GL+    ++    D  K    
Sbjct: 58  GLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILS 117

Query: 324 AVTIKCSVTLTGDYKLSGKLLVLPIEGEGKYNIKIRDIVIKTANDLVTVT-GADGKPHWH 500
           + +    V    DYK+ GK+L+LP+ G GK NI + D  +K+ ND+       +G+ +  
Sbjct: 118 SESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYD--LKSHNDIYCEKYEKNGETYLR 175

Query: 501 IESWKHTYEVKTG-AHFQFENLFNGNKVLATPVEEFVNSNWKDVMQEVAPPIVRSIVSEV 677
           I+  KH  +        +FENLF+GNK L   +  F+N N + + +E+      +  S V
Sbjct: 176 IK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETF-SLV 232

Query: 678 VAAVD-ALYKAVPAEELY 728
              +D  ++  VP ++++
Sbjct: 233 FTKIDNEIFNRVPFDKIF 250


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 697 CTRLCRPKNFTCSKLIVIL 753
           CT++    NFTC +++ +L
Sbjct: 222 CTQVYSTGNFTCLEVVFVL 240


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 136 KRQCRSWPPAFPT 174
           K  CRSW   FPT
Sbjct: 398 KNCCRSWLSKFPT 410


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 136 KRQCRSWPPAFPT 174
           K  CRSW   FPT
Sbjct: 398 KNCCRSWLSKFPT 410


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 684  QPPPRTRWTGRWAG 643
            +PPPR  W G   G
Sbjct: 998  KPPPREDWNGEILG 1011


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 674 LGHDGPDDGRGYFLHHVLPV*VHKFFDG 591
           L  D P +  GY    +  +  HK+FDG
Sbjct: 601 LCRDNPAERLGYQKGGISEIQKHKWFDG 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,694
Number of Sequences: 438
Number of extensions: 5029
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)