Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29j01
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   2.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90  SAANAIALGAMTVVAVGTFLFTWWQ 164
           S  N I LG++  +  G FLF  W+
Sbjct: 287 SQINGI-LGSLVAITGGCFLFRAWE 310


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 131 HNRHRA*CYSISSGCVAALRIRILGHR 51
           H R     + IS+GCV+ +  RI  +R
Sbjct: 18  HQRCSRDWFRISAGCVSRISNRISRNR 44


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 130 WRSEHFSLLGG 162
           W SEHF   GG
Sbjct: 333 WNSEHFFEYGG 343


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 72  N*NSWSSQNGNLFVATKNDNDCD 4
           N N+ ++ NGN   A+ N+N+ D
Sbjct: 249 NNNNGANDNGNGNGASNNNNNGD 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,854
Number of Sequences: 438
Number of extensions: 1965
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)