Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29i19
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 31 0.15
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.46
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.8
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 27 1.8
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 2.4
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 2.4
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 27 3.2
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 27 3.2
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 27 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.3
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 26 4.3
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 26 4.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.6
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 25 7.5
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 7.5
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 25 7.5
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 31.1 bits (67), Expect = 0.15
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 345 DKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEH-KLIIQERALR 521
++ + Q + D+ +L +S K++ EMQ +G E ++ EEH KL Q ++
Sbjct: 659 EELLDNQQKLYDLRIELDYTKSNCKQMEEEMQVLREGHESEIKDFIEEHSKLTKQLDDIK 718
Query: 522 TLFADAEKEERELFATMSAAVKLGHERERAHAERNK 629
F + R+L + + + L + ++ K
Sbjct: 719 NQFGIISSKNRDLLSELEKSKSLNNSLAALESKNKK 754
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +3
Query: 303 EEIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCT 482
EEI ++ +I Q+ + Q + R ++++ES+ KEL +++ + DE +L +
Sbjct: 954 EEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNKELEKKLK---EADEYWLLIVE 1010
Query: 483 EEHKLIIQERALRTLFADAEKEERE 557
E +++ L A E+ +
Sbjct: 1011 ELESKRTKDKELLRQCGQAVSEDEQ 1035
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 477 CTEEHKLIIQERALRTLFADAEKE 548
CT KL++ E A TLF+ E E
Sbjct: 190 CTSIQKLVVFENAFETLFSLLENE 213
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.5 bits (63), Expect = 0.46
Identities = 35/167 (20%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Frame = +3
Query: 120 RLKDKIN-LAQLNVTNREKVDQLITKYVPATKVS-EVAERFKYDNLTXKVQDLVTKYEKF 293
+L++K++ L+++N + + ++ T+ + + + E +R K D+L+ ++++ K K
Sbjct: 224 KLEEKVDYLSKVNDVEQSQNVKVFTERIRFLENALEKVQREK-DSLSTEMEE--DKSNKE 280
Query: 294 TGVE-EIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYL 470
E EI +QN + + ++ AQD + ++A ++ +++E + + +E
Sbjct: 281 VDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEE-KENSSSAFENEENSS 339
Query: 471 QLCTEEHKLIIQERA------LRTLFADAEKE-ERELFATMSAAVKL 590
+ +E I+Q + ++ L AD EKE E ++ A++ L
Sbjct: 340 YVHLQEDYAILQAKCDEFADRIQVLTADLEKEKENQIMHESEASIGL 386
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = -2
Query: 349 LSCASITVFCIAIISSTPVNFSYLVTKSCTXLVKLSYLNLSATSETFVAGTYLVIS*STF 170
++ + T + +STPV + L T +CT + Y + TS + + + T
Sbjct: 527 VTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPV---TS 583
Query: 169 SRFVTFNC 146
+ T NC
Sbjct: 584 TPVTTTNC 591
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 307 SSTPVNFSYLVTKSCTXLVKLSYLNLSATSETFVAGTYLVIS*STFSRFVTFNC 146
+STPV + L T +CT + Y + TS + + + T + T NC
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV---TSTPVTTTNC 532
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 307 SSTPVNFSYLVTKSCTXLVKLSYLNLSATS 218
+STPV + L T +CT + Y + TS
Sbjct: 459 TSTPVTSTPLTTTNCTTSTSIPYTSTPVTS 488
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 313 IISSTPVNFSYLVTKSCTXLVKLSYLNLSATS 218
I SSTPV + + T +CT + Y + TS
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTS 547
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 313 IISSTPVNFSYLVTKSCTXLVKLSYLNLSATSETFVAGTYLVIS 182
I SSTPV + + T +CT + Y + TS + + +S
Sbjct: 575 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVS 618
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = -2
Query: 364 WAAMNLSCASITVFCIAIISSTPVNFSYLVTKSCTXLVKLSYLNLSATSETFVAGTYL 191
+ A++ +C+++ V ++ +F+ +V + CT L+ + L S+TSET G+Y+
Sbjct: 177 YVALSFACSALIVLPTKFLARFS-SFN-VVFQICTILIFIISLAASSTSETRNTGSYI 232
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 369 RRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQER 512
R+ + +QL+N + +L+ ++ ++ + EE+K+I QER
Sbjct: 332 RKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQER 379
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 355 MNLSCASITVFCIAIISSTPVNFSY--LVTKSCTXLVKLSYLNLSATSETFV 206
M L A+ CI ++ T +NF+Y L CT +V L N AT F+
Sbjct: 144 MRLWNAAFGTLCIPLVYFTALNFNYSFLAATLCTLMVALD--NHLATISRFI 193
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.2
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +3
Query: 318 IQNTVIDAQDKFIAA-QDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHK 494
+Q+ V +A ++ A+ +D+++ + ++ IE K+ ++ Q +K +KY LC + +
Sbjct: 106 LQDDVENAFTRYAASLKDKKKMI---VSGIEKVHKDKLSKHQALVKAQDKYHYLCKKVNY 162
Query: 495 LIIQERALRTLFADAEKEERELFATMSAAVKLGHERERA-HAERNKY 632
+ Q+ L + EK +L T +A + + A A R+ Y
Sbjct: 163 YVSQQNML--FGKELEKNNAKLNKTQNAITASSSDYQSAVAAVRDSY 207
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 303 EEIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANI 404
+ I+ + NT +D + K + A + + VGR+ ANI
Sbjct: 10 QHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANI 43
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 303 EEIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANI 404
+ I+ + NT +D + K + A + + VGR+ ANI
Sbjct: 10 QHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANI 43
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +3
Query: 216 SEVAERFKYDNLTXKVQDLVTKYEKFTGVEEIMAIQNTV 332
S++ E+F + DL+ K+EK + E+ + N +
Sbjct: 1247 SQLCEKFNVQESLDSIDDLIEKFEKLSSSEKNDNLSNLI 1285
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 324 NTVIDAQDKFIAAQDRRRDVGRQLANIESRLKELHAEM--QNTMKGDEKYLQLCTEEHKL 497
N IDA ++ R + G+ L IES+L + + M Q + +E+ + ++ ++
Sbjct: 484 NKCIDACNEASEVDRREPNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEV 543
Query: 498 --IIQERALRTLFADAEKEERELFATM 572
I+Q+ A++ + A + L M
Sbjct: 544 LGILQDPAMQAILGQARENPAALMEHM 570
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 608 PLPLVAQLHGGRHRGEQLAF 549
P+P L+GGRH G LAF
Sbjct: 148 PVPSFNVLNGGRHAGGDLAF 167
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 396 ANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQERALRTLFADAEKEERELF 563
+ IE K LH+ +Q EK +++C ++H + +R+L +KEE +LF
Sbjct: 642 SEIEENRKTLHS-LQFGSTFYEKAIEICVDQHACQLCQRSL-------DKEEEKLF 689
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 402 IESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQERALRTLFADAEKEERELFATM 572
I R E +++ NT D K T+E +++ L + FA+ KEE+EL+ ++
Sbjct: 268 ITIRHLESQSDIINTTINDLKSQMTITDESSEDLEK--LHSNFAEKVKEEQELYKSL 322
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 246 NLTXKVQDLVTKYEKFTGVEEIMAIQNTVIDAQDKF 353
N++ V D V + + FT E+ +QN A+D+F
Sbjct: 114 NVSQDVTDAVPEEQDFTEFEDEQELQNQGESAEDEF 149
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 503 YYKLVLFSAELQVFLIPLHSILHFSM*FFQSRFY 402
+++L+LF+A +Q + P+ L F R+Y
Sbjct: 360 WFRLILFTASVQPYADPIIDYLERDKKIFAKRYY 393
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 387 RQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQERAL--RTLFADAEKEEREL 560
RQL+ I K+ ++ T + + +L +EH +E+A+ + +F+ EK + L
Sbjct: 47 RQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEH----EEQAITEQEIFSFQEKLDAML 102
Query: 561 FATMSAAVKLGHERERAHAER 623
+ +L H R ++R
Sbjct: 103 KRKQKLSEELDHYRAIISSKR 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,251
Number of Sequences: 5004
Number of extensions: 47527
Number of successful extensions: 152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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