Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29i17
         (101 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    19   7.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    19   7.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    18   9.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    18   9.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    18   9.9  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  VLPHSLKSQ*SKCGFKKK 100
           +LP +L +  +KC  K+K
Sbjct: 63  ILPDALSTGCNKCNEKQK 80


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  VLPHSLKSQ*SKCGFKKK 100
           +LP +L +  +KC  K+K
Sbjct: 63  ILPDALSTGCNKCNEKQK 80


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 95  F*NHIWITDSSVNVVKQKYLMVS 27
           F  +IW+ D+     KQ Y  ++
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIA 111


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 95  F*NHIWITDSSVNVVKQKYLMVS 27
           F  +IW+ D+     KQ Y  ++
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIA 111


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
          subunit protein.
          Length = 365

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 95 F*NHIWITDSSVNVVKQKYLMVS 27
          F  +IW+ D+     KQ Y  ++
Sbjct: 28 FIKNIWVPDTFFVNEKQSYFHIA 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,793
Number of Sequences: 438
Number of extensions: 218
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)