Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29h23
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 41 2e-04
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 29 0.77
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 29 0.77
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 28 1.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.8
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 4.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 5.4
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch... 26 5.4
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 25 9.4
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 40.7 bits (91), Expect = 2e-04
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Frame = +1
Query: 466 EALKQFCTEWPNLLNSEESIEKHYPLEII--SSDYCHASPSIRNPLARVVILRVQLADLK 639
E ++ E P L +S +K +I SD +S NP VV +V L
Sbjct: 85 ELYRKAAYELPGLTPYTQSFKKPADSQIFRFESDVQMSSFEKMNPKV-VVTFKVTNIPL- 142
Query: 640 LDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTACYHES 795
L++ + LVG RY+P+ DLV I++D+ + +QN ++ +LT+ ES
Sbjct: 143 LEEKQRHVLRLLVGPRYNPEEDLVRISSDKYSSALQNKYHLIKILTSLIEES 194
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 472 LKQFCTEWPNLLNSEESIEKHYPLEIISSDYCH-ASPSIRNPLARV 606
L F + P L+ S+ I + ISSD C AS +NPLA+V
Sbjct: 122 LINFSEDKPRLVWSQNRISDSFLSSTISSDACFIASIETKNPLAKV 167
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 112 NVKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDK 219
NV+LWR ++S ++++ EE + LD L++R K
Sbjct: 339 NVRLWRARASSR-ASIRSTREENRLKYLDSLRERYK 373
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 70 LIKRSKSGCFNSA---CNVKLWRLNSTSADSALKKGEEEEE 183
L+KR KSG + N ++W + + + +GEEEEE
Sbjct: 165 LVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEE 205
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 574 SPSIRNPLARVVILRVQLADLK--LDKHATDKFKRL-VGDRYDPKTDLVTITADRCPTKV 744
S + +P R + V +D + LD+ + RL + R+ P DL D C T V
Sbjct: 617 STELEDPYLRAIFAYVSNSDWRDVLDEVSLSLKDRLGIALRFLPDDDLSNYLCDLCHTTV 676
Query: 745 QNLDYVNYLLT 777
Q+ D LLT
Sbjct: 677 QSGDPEGLLLT 687
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 632 TSNSINMQQTSLRGWSVTGTTQKQI 706
TSN +N+ + S+R W V+ ++ I
Sbjct: 955 TSNCVNLSENSIRAWLVSSAVERLI 979
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 514 EESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYD 693
E+ I +H + II ++ H + L + V++ L + K A +FK GD+ +
Sbjct: 1051 EKYILEHCGIRIIEAELFHGYNPEKKELLQEVVIDHDLEPFEASKEAAHEFKLRHGDQVE 1110
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +1
Query: 484 CTEWPNLLNSEESIEKHYPLEIISSD-YCHASPSIRNPLARVVILRVQLADLKLDKHATD 660
C + N + S LEII SD C SIR L R +V + + LD T
Sbjct: 4594 CFNYANTASHHRSNSDIRQLEIIISDGICEDHDSIRKLLRRAQEEKVMIVFVILDNVNTQ 4653
Query: 661 KFKRLVGDR---YDPKTD 705
K ++ + YD K D
Sbjct: 4654 KKSSILDIKKVYYDTKED 4671
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 517 ESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKH 651
E+ + H L + Y H SPSI P A +L QL D L H
Sbjct: 3 EAEQVHQSLRSLVLSYAHFSPSILIP-ASQYLLAAQLRDEFLSLH 46
>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -1
Query: 726 IRCDRH*ICFWVVPVTDQPLKLVCCMFIEFEVC 628
+ + H C W+VP ++L F+++ VC
Sbjct: 22 VSSEDHCYCVWLVPAISSDIELRYRTFVDWAVC 54
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 505 LNSEESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADL 636
+NS ES HY +E+ S Y P I V + ++A L
Sbjct: 170 MNSNESSFLHYLVEVWSIFYLEILPYIEATFLPVTFAKFEIAQL 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,272
Number of Sequences: 5004
Number of extensions: 67731
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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