Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29h23
(795 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC109372-1|AAI09373.1| 323|Homo sapiens mitochondrial ribosomal... 228 2e-59
BC063515-1|AAH63515.1| 321|Homo sapiens MRPS35 protein protein. 228 2e-59
BC028346-1|AAH28346.2| 319|Homo sapiens MRPS35 protein protein. 228 2e-59
BC015862-1|AAH15862.2| 323|Homo sapiens mitochondrial ribosomal... 228 2e-59
AK075515-1|BAC11664.1| 323|Homo sapiens protein ( Homo sapiens ... 228 2e-59
AF182422-1|AAG14958.1| 227|Homo sapiens MDS023 protein. 184 3e-46
AK075378-1|BAC11579.1| 194|Homo sapiens protein ( Homo sapiens ... 163 5e-40
AF068296-1|AAF65185.1| 144|Homo sapiens HDCMD11P protein. 68 3e-11
Z85987-1|CAI42222.1| 961|Homo sapiens FYVE, RhoGEF and PH domai... 36 0.22
U11690-1|AAA57004.1| 961|Homo sapiens FGD1 protein. 36 0.22
BC034530-1|AAH34530.1| 961|Homo sapiens FYVE, RhoGEF and PH dom... 36 0.22
AK131370-1|BAD18521.1| 441|Homo sapiens protein ( Homo sapiens ... 34 0.51
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein. 31 6.3
AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein. 31 6.3
>BC109372-1|AAI09373.1| 323|Homo sapiens mitochondrial ribosomal
protein S35 protein.
Length = 323
Score = 228 bits (558), Expect = 2e-59
Identities = 104/185 (56%), Positives = 129/185 (69%)
Frame = +1
Query: 241 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 420
R P R ++MA +Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KI
Sbjct: 49 RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108
Query: 421 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLA 600
PNFLHLTP IK CEALK FCTEWP L+S+E EKH+P+EI S+DY + PS+RNP A
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRA 168
Query: 601 RVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTA 780
RVV+LRV+L+ L LD HA K +LVG+RY TD++TI DRCP + QN DY YLLT
Sbjct: 169 RVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTV 228
Query: 781 CYHES 795
YHES
Sbjct: 229 LYHES 233
>BC063515-1|AAH63515.1| 321|Homo sapiens MRPS35 protein protein.
Length = 321
Score = 228 bits (558), Expect = 2e-59
Identities = 104/185 (56%), Positives = 129/185 (69%)
Frame = +1
Query: 241 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 420
R P R ++MA +Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KI
Sbjct: 47 RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 106
Query: 421 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLA 600
PNFLHLTP IK CEALK FCTEWP L+S+E EKH+P+EI S+DY + PS+RNP A
Sbjct: 107 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRA 166
Query: 601 RVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTA 780
RVV+LRV+L+ L LD HA K +LVG+RY TD++TI DRCP + QN DY YLLT
Sbjct: 167 RVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTV 226
Query: 781 CYHES 795
YHES
Sbjct: 227 LYHES 231
>BC028346-1|AAH28346.2| 319|Homo sapiens MRPS35 protein protein.
Length = 319
Score = 228 bits (558), Expect = 2e-59
Identities = 104/185 (56%), Positives = 129/185 (69%)
Frame = +1
Query: 241 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 420
R P R ++MA +Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KI
Sbjct: 45 RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 104
Query: 421 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLA 600
PNFLHLTP IK CEALK FCTEWP L+S+E EKH+P+EI S+DY + PS+RNP A
Sbjct: 105 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRA 164
Query: 601 RVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTA 780
RVV+LRV+L+ L LD HA K +LVG+RY TD++TI DRCP + QN DY YLLT
Sbjct: 165 RVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTV 224
Query: 781 CYHES 795
YHES
Sbjct: 225 LYHES 229
>BC015862-1|AAH15862.2| 323|Homo sapiens mitochondrial ribosomal
protein S35 protein.
Length = 323
Score = 228 bits (558), Expect = 2e-59
Identities = 104/185 (56%), Positives = 129/185 (69%)
Frame = +1
Query: 241 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 420
R P R ++MA +Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KI
Sbjct: 49 RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108
Query: 421 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLA 600
PNFLHLTP IK CEALK FCTEWP L+S+E EKH+P+EI S+DY + PS+RNP A
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRA 168
Query: 601 RVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTA 780
RVV+LRV+L+ L LD HA K +LVG+RY TD++TI DRCP + QN DY YLLT
Sbjct: 169 RVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTV 228
Query: 781 CYHES 795
YHES
Sbjct: 229 LYHES 233
>AK075515-1|BAC11664.1| 323|Homo sapiens protein ( Homo sapiens
cDNA PSEC0213 fis, clone HEMBA1004078, highly similar to
Mitochondrial ribosomal protein S35. ).
Length = 323
Score = 228 bits (558), Expect = 2e-59
Identities = 104/185 (56%), Positives = 129/185 (69%)
Frame = +1
Query: 241 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 420
R P R ++MA +Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KI
Sbjct: 49 RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108
Query: 421 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLA 600
PNFLHLTP IK CEALK FCTEWP L+S+E EKH+P+EI S+DY + PS+RNP A
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRA 168
Query: 601 RVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTA 780
RVV+LRV+L+ L LD HA K +LVG+RY TD++TI DRCP + QN DY YLLT
Sbjct: 169 RVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTV 228
Query: 781 CYHES 795
YHES
Sbjct: 229 LYHES 233
>AF182422-1|AAG14958.1| 227|Homo sapiens MDS023 protein.
Length = 227
Score = 184 bits (448), Expect = 3e-46
Identities = 83/135 (61%), Positives = 100/135 (74%)
Frame = +1
Query: 391 KKANAELMKIPNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCH 570
K+ N EL+KIPNFLHLTP IK CEALK FCTEWP L+S+E EKH+P+EI S+DY
Sbjct: 3 KEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVS 62
Query: 571 ASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQN 750
+ PS+RNP ARVV+LRV+L+ L LD HA K +LVG+RY TD++TI DRCP + QN
Sbjct: 63 SGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQN 122
Query: 751 LDYVNYLLTACYHES 795
DY YLLT YHES
Sbjct: 123 YDYAVYLLTVLYHES 137
>AK075378-1|BAC11579.1| 194|Homo sapiens protein ( Homo sapiens
cDNA PSEC0068 fis, clone NT2RP2001270. ).
Length = 194
Score = 163 bits (397), Expect = 5e-40
Identities = 73/134 (54%), Positives = 93/134 (69%)
Frame = +1
Query: 241 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 420
R P R ++MA +Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KI
Sbjct: 49 RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108
Query: 421 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLA 600
PNFLHLTP IK CEALK FCTEWP L+S+E EKH+P+EI S+DY + PS+RNP A
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRA 168
Query: 601 RVVILRVQLADLKL 642
RVV+LRV + +L
Sbjct: 169 RVVVLRVPFKEAEL 182
>AF068296-1|AAF65185.1| 144|Homo sapiens HDCMD11P protein.
Length = 144
Score = 68.1 bits (159), Expect = 3e-11
Identities = 31/54 (57%), Positives = 36/54 (66%)
Frame = +1
Query: 634 LKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTACYHES 795
L LD HA K +LVG+RY TD++TI DRCP + QN DY YLLT YHES
Sbjct: 1 LNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHES 54
>Z85987-1|CAI42222.1| 961|Homo sapiens FYVE, RhoGEF and PH domain
containing 1 (faciogenital dysplasia) protein.
Length = 961
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 307 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 447
PGP T PS P P+++ PK Q PP K + ++ ++P L PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182
>U11690-1|AAA57004.1| 961|Homo sapiens FGD1 protein.
Length = 961
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 307 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 447
PGP T PS P P+++ PK Q PP K + ++ ++P L PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182
>BC034530-1|AAH34530.1| 961|Homo sapiens FYVE, RhoGEF and PH domain
containing 1 (faciogenital dysplasia) protein.
Length = 961
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 307 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 447
PGP T PS P P+++ PK Q PP K + ++ ++P L PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182
>AK131370-1|BAD18521.1| 441|Homo sapiens protein ( Homo sapiens
cDNA FLJ16419 fis, clone BRACE3003026. ).
Length = 441
Score = 34.3 bits (75), Expect = 0.51
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 586 RNPLARVVILRVQLADLKLDKHATDKFKRLVGDR-YDPKTDLVTITADRCPTKVQNLDYV 762
++ + R++ LR++L +LK + L+ R Y K+ V T D+C T + L
Sbjct: 97 KDAVVRLIHLRLKLQELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQT 156
Query: 763 NYLLTACYH 789
Y T CY+
Sbjct: 157 WYTCTGCYY 165
>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
Length = 1192
Score = 30.7 bits (66), Expect = 6.3
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 283 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 462
N + +P P F P P+P P APPG+ +M P+ H PP + Q
Sbjct: 104 NHQMRHPFPVPPCFPPMPPPMPCPNN-PPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQ 162
>AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.
Length = 1374
Score = 30.7 bits (66), Expect = 6.3
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 283 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 462
N + +P P F P P+P P APPG+ +M P+ H PP + Q
Sbjct: 104 NHQMRHPFPVPPCFPPMPPPMPCPNN-PPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQ 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,148,430
Number of Sequences: 237096
Number of extensions: 2421534
Number of successful extensions: 5529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5528
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -