Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h23
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   10.0 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   10.0 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +1

Query: 292 WGNV-WPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVI 453
           W  V W G   +  S  P  +    + +G   PG     +    PN   L+ P +
Sbjct: 225 WKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEV 279


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +1

Query: 292 WGNV-WPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVI 453
           W  V W G   +  S  P  +    + +G   PG     +    PN   L+ P +
Sbjct: 278 WKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEV 332


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2
          protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 11 KWRFVTRCLQ 40
          KWRF+ +CL+
Sbjct: 69 KWRFLLQCLE 78


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 193 LDILKKRDKMQRRVVKRTDVQPDRIDRM 276
           +D + + D+M R     T  + DR+DRM
Sbjct: 387 MDRIDRMDRMDRMDTMDTMDRIDRMDRM 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,949
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)