Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h17
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...   238   5e-64
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           28   1.3  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   2.9  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    27   2.9  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   3.9  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   3.9  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   3.9  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   8.9  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   8.9  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   8.9  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   8.9  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score =  238 bits (583), Expect = 5e-64
 Identities = 106/196 (54%), Positives = 147/196 (75%)
 Frame = +3

Query: 174 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 353
           +K  WF E  +MWPG   + +VK+VL+  KSKYQ++ VF++ + G VLVLDG IQ T++D
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERD 70

Query: 354 EFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKR 533
           EFSYQEMI+ L L  H NP+ VL++GGGDGGV REV KH  V+  +L +ID+ VI++SK+
Sbjct: 71  EFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQ 130

Query: 534 YLPFMAVGFDSPKLTLHVGDGFEFMKNHRQEFDVIITDSSDPVGPAVNLFQKNYFSLMKS 713
           YLP M+ GF+ PK+ +H+GDGF+F+++++  FDVIITDSSDP GPA  LFQK YF L+  
Sbjct: 131 YLPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDVIITDSSDPDGPAEALFQKPYFQLLSD 190

Query: 714 ALKPDGIVCSQAGTIW 761
           AL+  G++ +QA  +W
Sbjct: 191 ALRGGGVITTQAECMW 206


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 345 QKDEFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIEL 524
           QK  ++Y+ M  F+P   H      +        +A  +AKH    H++   + D VIEL
Sbjct: 788 QKGLYAYEHMFQFIPR--HTLAIQAICQAHRSYSMAVRLAKHWFYSHLLTDHVTDEVIEL 845


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 579 LHVGDGFEFMKNHRQEFDVIITDSSDPVG 665
           + VGD  + M N     D++I +SSDP G
Sbjct: 297 VRVGDFVKVMDNDEIPADIVIINSSDPEG 325


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 247 YCTQKNQNTRISKFLIQPVWGRFLSWTESYN 339
           +CTQK   + +SKF   P   R +  TE+ N
Sbjct: 20  FCTQKLHRSTVSKFFEHPTSKRSIGVTENGN 50


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 294 TTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHK-NPENVLIVGGGD-GGVAREVAK 467
           TTS  K +V +G     + D F+ +   S L  C       NV+IVGGGD   VA++  K
Sbjct: 326 TTS--KTIVWNGPAGVFEFDNFA-KGTKSMLDACVKTCEAGNVVIVGGGDTATVAKKYGK 382

Query: 468 HPQVKHI 488
              + H+
Sbjct: 383 EDALSHV 389


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 207 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 353
           +W G  +   +K +L   K K  N+  FD   L  V+    +++ +  D
Sbjct: 55  LWDGHVWIGSLKNILIYLKQKGYNLDNFDAKQLANVMAFTSLLEGSVND 103


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 352 SF*VHCMI-PSKTRTFPKLVVSKTWIFWY 269
           SF V  +I PS+T    K  V KTW +W+
Sbjct: 806 SFSVLSLICPSRTLIIDKACVEKTWPYWW 834


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 420 LIVGGGDGGV--AREVAKHPQVKHIVLVEIDDRV 515
           L++GGG GG+  AR  AKH     + L+E   R+
Sbjct: 11  LVIGGGSGGLASARRAAKHG--AKVALIEASGRL 42


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 363 YQEMISFLPLCCHKN---PENVLIVGGGDGGVAREVAK 467
           Y++++S L L   +N   PE VLIV   +G + RE  K
Sbjct: 410 YKDILSTLRLVMIENMVKPEEVLIVENDEGEIVREFVK 447


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 258 EKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIV 428
           +K+K     + D  SLG   +   +I C  K     + +I  + L CH  PE VL V
Sbjct: 190 QKTKPTQQAIRDLRSLG---ITPDLIACRCKQPLE-KSVIDKISLFCHVGPEQVLAV 242


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 579 LHVGDGFEFMKNHRQEFDVIITDSSD------PVGPAVNLFQKNYFSLMKSALKPDGI 734
           L  GD F+  + HR + +++     D      PV     L++ +Y  L  ++LKP+ +
Sbjct: 686 LKYGDAFKVCRTHRLDLNILFDYDPDLFLKNIPVF-VDGLYRVDYLDLFLTSLKPENV 742


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 QCTQKDEFSYQEMISFLP 389
           +C+QKD   YQE  SF P
Sbjct: 326 RCSQKDAQIYQEWYSFFP 343


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 QCTQKDEFSYQEMISFLP 389
           +C+QKD   YQE  SF P
Sbjct: 280 RCSQKDAQIYQEWYSFFP 297


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 681 FQKNYFSLMKSALKPDGIVCSQA 749
           FQK+  S++ SAL P+GIV + A
Sbjct: 58  FQKDVDSVVDSALDPNGIVITGA 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,208
Number of Sequences: 5004
Number of extensions: 67248
Number of successful extensions: 185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)