Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h17
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWVTVL 600
           W+ V++VL  LF+WV  L
Sbjct: 474 WKFVAMVLDRLFLWVFTL 491


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWVTVL 600
           W+ V++VL  LF+W+  L
Sbjct: 511 WKYVAMVLDRLFLWIFTL 528


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWVTVL 600
           W+ V++VL  LF+W+  L
Sbjct: 511 WKYVAMVLDRLFLWIFTL 528


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 547 WRSVSIVLS*LFMWVTVL 600
           W+ V++VL  LF+W+  L
Sbjct: 506 WKYVAMVLDRLFLWIFTL 523


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 324 PRQEPSPNWLYQKLGYSGILI 262
           P+  P PNW   K G  G  I
Sbjct: 107 PKLTPYPNWAQNKAGACGSAI 127


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 529 KGTSRSWRSVSIVLS*LFMWV 591
           +     W+ V++VL  +F+W+
Sbjct: 533 ESVEEDWKYVAMVLDRIFLWI 553


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 541 RSWRSVSIVLS*LFMWV 591
           + W  V++VL  LF+W+
Sbjct: 476 QDWGFVAMVLDRLFLWI 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,100
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)