Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h12
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   0.25 
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    23   4.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   5.4  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    23   5.4  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    23   7.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    22   9.4  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    22   9.4  

>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 22  GLFC*YVPVYLDYVPIAYPLFFKYYIILHNYV 117
           GL   YVP++  Y    +P FF ++ I  N V
Sbjct: 50  GLTVYYVPLHTVYRETTFPSFFSFFPIFRNIV 81


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -1

Query: 173 FFYWNGTFYFLFSLYFLNVT*LCNI 99
           F YW     F F  Y   V  +C I
Sbjct: 242 FIYWTSLSIFQFGAYAAGVAIMCGI 266


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 173 FFYWNGTFYFLFS 135
           FFYW   F+F FS
Sbjct: 74  FFYWFFFFFFFFS 86


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 167 YWNGTFYFLFSLYFLN 120
           YW    +FLF + F N
Sbjct: 3   YWQAILFFLFGIAFAN 18


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 176 FFFYWNGTFYFL 141
           +FFY NGT +FL
Sbjct: 30  YFFYENGTRFFL 41


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 91  YYIILHNYVTLRK 129
           YY++ HN+  LRK
Sbjct: 601 YYVMKHNFYPLRK 613


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 15  IIRSFLLIRT-CLFRLCTYCLSTVL*ILYY 101
           I+ SFLLI    +FR+CT  L + L   +Y
Sbjct: 17  ILISFLLIALESMFRICTVILPSPLRNWFY 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,354
Number of Sequences: 5004
Number of extensions: 5700
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)