Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h12
         (176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    18   9.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    18   9.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 58  YVPIAYPLFFKYYIILHNYVTLRK 129
           Y  I +P+ F  +IIL+  + L K
Sbjct: 365 YSRIGFPILFMLFIILYWPILLFK 388


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 63  TYCLSTVL*ILYYITQL 113
           +YC+  +L I+YY +Q+
Sbjct: 219 SYCIPMIL-IIYYYSQI 234


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 152 FYFLFSLYFLNV 117
           F+F FS   LNV
Sbjct: 365 FFFPFSFLILNV 376


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 173 FFYWNGTFYFLFSLYFLNVT 114
           +FY NGT     S+   N+T
Sbjct: 377 YFYPNGTEKMTLSVNESNIT 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,719
Number of Sequences: 438
Number of extensions: 458
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)