Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h10
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.26 
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    27   0.46 
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   1.1  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   1.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   2.5  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   2.5  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    24   4.3  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    23   5.7  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    23   5.7  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    23   7.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    23   7.5  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    23   9.9  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 27.9 bits (59), Expect = 0.26
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 134 STLHASRSWIAESPIHFGSSGVDPANVNKLNDRYFE 241
           S  H+S + ++++ IH G   VDP  VN+ N   FE
Sbjct: 373 SNFHSSSTELSDNSIHQGRRAVDPV-VNQNNPSNFE 407


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 27.1 bits (57), Expect = 0.46
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 131 RSTLHASRSWIAESPIHFGSSGVDPANVNKLNDRYFEIKQI 253
           R+    S +WI  S IH G + V   N     D+Y ++ +I
Sbjct: 359 RTAQEQSETWIGSSTIHLGDTAV--PNALLFIDKYMQVPRI 397


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 148 CVERGSF*VDPTAIFCDPDW 89
           C E+GS   +P  +F DP W
Sbjct: 139 CHEQGSLIEEPRPLFLDPSW 158


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 89  PVRIAKDCCWINLERSTLHASRSWIAESPIH 181
           PV++ K CCW       L   R  + ESP+H
Sbjct: 156 PVQLLKRCCW-------LQGWRDNLVESPVH 179


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 28  IHSPIKFN*FSMDRQERVGAASQDRKRLLLDQPRTIHAPRI 150
           +HSPI  +  S++RQ R   +  +     L+  R I+ PR+
Sbjct: 50  VHSPILESPTSLNRQHRNSFSFNNVSSPSLEDERLINFPRV 90


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 95  RIAKDCCWINLERSTLHASRSW 160
           R  +  CW + +R  L ASR W
Sbjct: 67  RAIQSVCWSSCDRFLLTASRDW 88


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 128 ERSTLHASRSWIAESPIHFGSSGVDPANVN 217
           +RS  H S S    +P     S +DPA ++
Sbjct: 95  QRSASHGSTSSATSTPKRLSISSMDPARIH 124


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 20  TSESIAR*NSTDSVWIGRSALEQPVRIAKDCCWINLERSTLHASRSW 160
           T  S+    +TD  WI    +++  R AK    +    S  H ++ W
Sbjct: 169 TGSSVLFNPNTDEYWIDPDYVDERARAAKGSVVMGYMASLGHVTQVW 215


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 100 RKRLLLDQPRTIHAPRITILDRGIAD 177
           RKRL LD+P  +H   +    + +AD
Sbjct: 328 RKRLSLDEPAELHNQVVVPSQQPVAD 353


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 53  DSVWIGRSALEQPV-RIAKDCCW--INLERSTLHASRSWIAESPIHFGSSGVDPAN 211
           D +W      EQ + R  + C W    LER+TL+A+++ I +        GVD A+
Sbjct: 147 DVIW--HRMCEQHINRKCEKCGWGLPLLERNTLYAAKASIQKRYERLTKRGVDQAH 200


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 141  SVDRSRLIQQQSFAILTGCSNALLPIHTESVEFYRAMDSLVQRRR 7
            S   +  I  Q FA+    SN LLP  +   E +      V++R+
Sbjct: 1036 STPNNETIHDQLFAVSKQISNELLPTTSSYHEIWIEDPETVEKRK 1080


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 180 WIGDSAIQDRDAWSVDRSRLI 118
           W G++  Q ++A+ VD+S ++
Sbjct: 168 WFGNNDDQKQEAYEVDKSNMM 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,370
Number of Sequences: 5004
Number of extensions: 21232
Number of successful extensions: 53
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)