Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29h10
(271 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0141 + 1045155-1045365,1045457-1045611,1045702-1046092,104... 29 0.39
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889... 29 0.67
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 27 2.1
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 27 2.7
11_02_0137 - 8702661-8703495,8703820-8704628 26 4.7
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 25 8.3
06_03_0326 + 19602725-19602920,19603133-19603155 25 8.3
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 25 8.3
06_01_0849 - 6469308-6469838,6469859-6470320 25 8.3
05_01_0520 - 4492182-4492780,4496886-4497951 25 8.3
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 25 8.3
01_05_0198 + 19170217-19171701 25 8.3
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344... 25 8.3
>07_01_0141 +
1045155-1045365,1045457-1045611,1045702-1046092,
1046238-1046314,1046447-1046680
Length = 355
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 80 LEQPVRIAKDCCWINLERSTLHASRSWIAESPIHFGSSGV 199
+ QP+ + + C+I E+S+ S+S E P+HF SG+
Sbjct: 294 VNQPIVLMQGLCYIPQEQSS---SQSGSPEGPLHFSGSGM 330
>09_04_0447 +
17688248-17688319,17688414-17688515,17688852-17688981,
17689198-17689290,17689363-17689451,17689889-17689969,
17690118-17690207,17690653-17690772,17690877-17690927,
17691125-17691171,17691321-17691378,17691451-17691507
Length = 329
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 137 TLHASRSWIAESPIHFGSSGVDPANVNK 220
T +SR WIA+S SSG++P NV+K
Sbjct: 232 TPDSSRYWIADSYEERFSSGLEPENVDK 259
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 147 HHDLGSRNRRSILDRPVWI 203
H DLG RN S++D VWI
Sbjct: 1793 HPDLGIRNLTSLMDLNVWI 1811
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 174 GDSAIQDRDAWSVDRSRLIQQQ 109
G S ++D+DA ++ R RL QQQ
Sbjct: 31 GSSVVRDKDATTMMRRRLYQQQ 52
>11_02_0137 - 8702661-8703495,8703820-8704628
Length = 547
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 62 WIGRSALEQPVRIAKDCCWINL 127
W+GR A E+ RI + W NL
Sbjct: 314 WVGRLAREEFTRITQQQSWANL 335
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 61 MDRQERVGAASQDRKRLLLDQPRTIHAPRITILD 162
M+ ++R AA +DR ++ PR APRI LD
Sbjct: 1 MEEEKRARAAERDRA--IVRSPRKGKAPRIEPLD 32
>06_03_0326 + 19602725-19602920,19603133-19603155
Length = 72
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 267 FFIIRICFISKYLSFNLFTLAGSTPDDPKWIGDSAI 160
FFI + F+ + L LAGS P +W+ DSA+
Sbjct: 8 FFICAV-FLLVVTTPGLPRLAGSVPLGRRWLQDSAV 42
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 36 PDKIQLIQYGSAGARWSSQSGSQKIAVGST*ND 134
PD++ I+ S RWS+Q G + T +D
Sbjct: 1314 PDELYYIRSLSRCKRWSAQGGKSNVYFAKTLDD 1346
>06_01_0849 - 6469308-6469838,6469859-6470320
Length = 330
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 79 RAPADPY*IS*ILSGYGFTRPTTA 8
R+P+ P + ILSG G TRP A
Sbjct: 71 RSPSKPDAVLAILSGLGLTRPDIA 94
>05_01_0520 - 4492182-4492780,4496886-4497951
Length = 554
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 92 VRIAKDC-CWINLERSTLHASRSWIAE 169
+ +++DC C++N +R L+ W+ E
Sbjct: 264 IDVSQDCLCFVNTDRDDLYKLSVWVLE 290
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 217 VYISRIHTGRSKMDRRFRDP 158
V + HTGR + DR + DP
Sbjct: 157 VVFRKTHTGRIRRDRHYTDP 176
>01_05_0198 + 19170217-19171701
Length = 494
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 246 FISKYLSFNLFTLAGSTPDDP 184
F+SKY F FT STP P
Sbjct: 242 FVSKYSRFPYFTRPKSTPPPP 262
>01_01_0467 -
3446243-3446254,3446331-3446420,3446544-3446816,
3446898-3447066,3447579-3447646,3447890-3448074,
3448683-3448806
Length = 306
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 267 FFIIRICFISKYLSFNLFTLAGST 196
FFI+ C IS ++F+ F + G T
Sbjct: 183 FFIVLSCLISVSVNFSTFLVIGKT 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,966,346
Number of Sequences: 37544
Number of extensions: 147830
Number of successful extensions: 393
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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