Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h05
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.96 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.96 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 329 CIYPILSTEVHNVFASIICSSYTR 258
           CIY + S +    F SIIC  + +
Sbjct: 60  CIYALFSKDFRFAFKSIICKCFCK 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 329 CIYPILSTEVHNVFASIICSSYTR 258
           CIY + S +    F SIIC  + +
Sbjct: 508 CIYALFSKDFRFAFKSIICKCFCK 531


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 35 NEADNFDNYNCF 70
          NE +NF NY CF
Sbjct: 60 NEEENFRNYGCF 71


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 571 STNIPAELAKYISCF--WPTAIN 509
           ST +PA  AK +SC   W  AIN
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAIN 339


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 571 STNIPAELAKYISCF--WPTAIN 509
           ST +PA  AK +SC   W  AIN
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAIN 339


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 263 TRIDARNFSELFSVKI 216
           T IDAR F +LF ++I
Sbjct: 348 THIDARMFKDLFFLQI 363


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 570 LKTIDGVLYKIHLETFIVNGFASDINGKLYFSTPNDIFYINEDAGTLDRV 719
           L+ +D  L K++   F++ G  +D   KL+           ED     RV
Sbjct: 77  LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRV 126


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 631 NPLTIKVSKCILYKTPSI 578
           +P T K SKC +  TP I
Sbjct: 275 SPATPKGSKCSMITTPEI 292


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 81  NQEVEVLKDNV 113
           NQE E++KDN+
Sbjct: 208 NQEYEIMKDNL 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,533
Number of Sequences: 438
Number of extensions: 4701
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)