Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29h03
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    91   5e-19
AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical ...    31   0.72 
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    29   2.9  

>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
 Frame = +1

Query: 112 ITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPENYGLYAEVD 291
           + + L+ S     C++PK  AS F++ D     +  +ITEFTL+C N  P+N    AEV+
Sbjct: 6   VALCLVASALCAKCESPKYSASSFSTTDGFFHYKTTFITEFTLQCSNN-PKNIQYTAEVN 64

Query: 292 GKSLTAARIGEN-KYQISWTEEPAKARSGVHQINILDEEGWASLRRARRADPAASVAPLL 468
           G+ +  +   E  K+Q+SWT E   A +    INI DEEG A   +    +P     PL 
Sbjct: 65  GRLIPVSISDETAKFQVSWTLEHKDAGAQTFNINIFDEEGAAQYAK----NPVTK--PLF 118

Query: 469 AIQLSHPGSYSGPWVNSEILATFISILVAYTALRNKSK 582
            +Q SH G  +   ++SE +A  I ++  Y A+R K++
Sbjct: 119 TVQQSHGGLATKSPISSETVAVIIVVIGLYYAIRQKTE 156


>AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.1 protein.
          Length = 704

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +1

Query: 136 ICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSLTAAR 315
           ICA+  QNP+++     SLD    T+   I E +   +    EN     E   KS     
Sbjct: 274 ICAKPAQNPEIDLPEVPSLDLEETTENPEIPEISTPREEDSAENLENLVENSEKSEILED 333

Query: 316 IGENKYQISWTEE 354
           + EN   ++   E
Sbjct: 334 LEENSKNLTENSE 346


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 244 CDNTLPENYGLYAEVDGKSLTAARIG 321
           CD  LPE+YGL   VDG       IG
Sbjct: 516 CDQCLPEHYGLSEHVDGCKACDCDIG 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,951,390
Number of Sequences: 27780
Number of extensions: 249575
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)