Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29g19
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.9  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   4.9  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 422 SNWSYTNNTKLR*LYTIK*NK*LSTLRRQLIFCY 321
           SNW+YTN+  +R    +K ++ + T+ R+L  CY
Sbjct: 286 SNWNYTNDVPMR----MK-HRGMFTIPRELTLCY 314


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 129 FLYYSCKLLVSAGYIIKGNTY 191
           F+YY C L+++  Y++K N Y
Sbjct: 589 FIYYLCILVLATYYVMKHNFY 609


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 724 SRVRRIDDDVCGR--YQHACLSPAPSTAAEYYTKDYD 620
           +R  R DDD   R  Y+ + LS APS A+ Y   D D
Sbjct: 159 TRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDDDRD 195


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 78  FTTNLKIRTSRFFVNCQFLYYSCKLLVSAGYIIKGNTYLFNV 203
           +++N  +    +F+N Q   Y   L +S+GY I+    LF++
Sbjct: 314 YSSNSCLGIPSYFLNPQKARYMLMLAISSGYSIRDIEDLFSI 355


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 78  FTTNLKIRTSRFFVNCQFLYYSCKLLVSAGYIIKGNTYLFNV 203
           +++N  +    +F+N Q   Y   L +S+GY I+    LF++
Sbjct: 314 YSSNSCLGIPSYFLNPQKARYMLMLAISSGYSIRDIEGLFSI 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,148
Number of Sequences: 5004
Number of extensions: 51046
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)