Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29g14
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.87
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 27 2.6
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 27 2.6
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 27 3.5
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 27 3.5
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.6
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 4.6
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 4.6
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 4.6
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 28.7 bits (61), Expect = 0.87
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 523 IRTWEFVPTTGIPNL*ASPNAQSLLNCSTTATSKCILFFH 404
+R W +P TG+P L A N Q + + S+ TS I H
Sbjct: 903 LRIWNMLPETGVPILVADINPQ-MTSSSSNETSHLIQELH 941
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 429 VAVVEQFNSDCALGLAYKLGIPVVGTNSHVLMPYQYERFGIHYNPSYMT 575
V ++ + SD A +GI + G + YE FG+H P Y T
Sbjct: 380 VRAIQHYTSDEA-SHEQSMGILIHGDAAFAAQGVVYETFGLHALPGYST 427
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -1
Query: 371 FAIFHASVHQIKADFNQRFIGPFDRKG--VFHYFCGVC*AYITIILKRFGLREMRDYSHA 198
FA ++ +K + RF+G D+KG V Y C + A I + + D+ +
Sbjct: 362 FAASRNAMALVKQGWAPRFLGRVDQKGRPVISYLCSLAMACIAYVNAAPDGSVVFDWLMS 421
Query: 197 VSSSGQF 177
VS G F
Sbjct: 422 VSGGGAF 428
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -3
Query: 462 HNHC*TVRQQQRQNVFYFSTSPVPPYWQALFCNFP--RQCSSNKS*LQSKIYRTFRQKRR 289
++HC +V+ +ST + L C + C+ K+ +++IY T ++
Sbjct: 290 YSHCTLYLFSHDPSVYNWSTQYTTGIYVLLLCCYYIFDTCNGQKNHFRNQIYGTEVHRKT 349
Query: 288 FPLFLWCLL 262
FP W ++
Sbjct: 350 FPQLPWLII 358
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = +3
Query: 531 QYERFGIHYN-PSYMTFQFLEGGTK---PTLFQRIERTI----FHHYYNFIFEYLSQRTN 686
+Y+RFGIH+N PS+ T + ++ PT + R R+ + YY ++Y++ +
Sbjct: 105 EYDRFGIHWNQPSHPTHPSPQNWSQARYPT-YSRSRRSAGMGSWEEYYYNSYDYMNDQNA 163
Query: 687 QN 692
N
Sbjct: 164 SN 165
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -3
Query: 393 PPYWQALFCNFPRQCSSNKS*LQSKIYRTFRQKRRFPLFLWCLLSLYH 250
P W C+ +QC+S + + R FR+ +F++C + H
Sbjct: 239 PAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLH 286
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -3
Query: 393 PPYWQALFCNFPRQCSSNKS*LQSKIYRTFRQKRRFPLFLWCLLSLYH 250
P W C+ +QC+S + + R FR+ +F++C + H
Sbjct: 239 PAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLH 286
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -3
Query: 393 PPYWQALFCNFPRQCSSNKS*LQSKIYRTFRQKRRFPLFLWCLLSLYH 250
P W C+ +QC+S + + R FR+ +F++C + H
Sbjct: 211 PAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLH 258
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -3
Query: 393 PPYWQALFCNFPRQCSSNKS*LQSKIYRTFRQKRRFPLFLWCLLSLYH 250
P W C+ +QC+S + + R FR+ +F++C + H
Sbjct: 239 PAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLH 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,790
Number of Sequences: 5004
Number of extensions: 74994
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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