Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29g08
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.9  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.0  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    25   9.0  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 614 FSSHLKLVNEKNLYFRTNSHKITQI*TKKELLRKF 510
           FSSH  +  +K+ Y   N H ++ + + KE +  F
Sbjct: 582 FSSHTPVNVDKSSYLEMNGHSLSTVISGKESISSF 616


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 615 LKLNQVINCLFSKRTSLFQQYLRPLSRVSK 704
           L  NQV++C FS   SLF++ L P ++V K
Sbjct: 5   LTKNQVLHCQFSSWYSLFRK-LTPKAKVIK 33


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 153 GFSDAFKMPEMPEIKSLEFDDIKTHVA 233
           GFSD  ++ E P    + +DDI +H A
Sbjct: 919 GFSDINEIKEHPFFNGINWDDIFSHEA 945


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 5   CGFSALQFVSRVLSFHXSDNGVYEVSFCDYINYN 106
           C  + L  +     +  S  G+Y  +FCD IN+N
Sbjct: 135 CRINELTRICNASFYATSCFGLYGFAFCDLINHN 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,226
Number of Sequences: 5004
Number of extensions: 49068
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)