Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f24
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 33 0.025
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 28 1.2
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 27 1.6
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 2.8
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 3.7
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 26 3.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 4.9
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 25 6.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 6.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 8.6
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 33.5 bits (73), Expect = 0.025
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -3
Query: 458 IEKSILQSMNLKSGSWILSGLCMGVKCRAASA*TPYWSRVCFGLESHLFLVGHQRAWSDQ 279
I+KS+ + + LK+ W++ LC+ + T +S + G+ + L +VG+Q W
Sbjct: 36 IDKSLNRKLKLKTDLWVMPLLCLISAFQYMDKSTSNYSSI-MGIRTDLNMVGNQYNWVGT 94
Query: 278 SF 273
SF
Sbjct: 95 SF 96
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 178 DLNEKRTMVVKGDMHIGGVMLKLTESFGKE 267
++++ T+ GD HIG ++ K E GKE
Sbjct: 174 EISQVATISANGDTHIGELLAKAMERVGKE 203
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 244 LTESFGKEFKKDWSDHALWWPT 309
L SF E KK W+ +LW+ T
Sbjct: 9 LLRSFAAEMKKPWTAESLWYET 30
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 130 GEIVGDGSWNLTIYVTDLNEKRTMVVK 210
GEI+G+GS++ + T+ + KR +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 322 LSRPKHTLDQYGVHADAA-LHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFS 471
LSR TL + V+ + A + P+H LR +L DL DC D TFS
Sbjct: 300 LSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFS 350
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -3
Query: 503 IPRFLHSCITALNVSIEKSILQSMNLKSGSWILSGLCM 390
IP+ +CI+ +V I S+L ++ + G+ ++ G +
Sbjct: 327 IPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSL 364
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 433 IDCKIDFSIDTFSAVIQLCKNLGIRHSEELSLCY 534
+D ++ D+ +I++ +LG EE+S CY
Sbjct: 984 LDAQVQSCADSTELLIKVLSDLGSTEDEEISDCY 1017
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 139 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKK 276
+G G++++++ + GD H+GG +L F +EFK+
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKR 245
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 136 IVGDGSWNLTIYVTDLNEKRT-----MVVKGDMHIGGVMLKLT 249
+V D S NL + D + +V +GD HIG V+ +T
Sbjct: 1270 VVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 284 RTMPSGGRLETNGSPDQNTP--WTSTEFTRTPP 376
+T+ G+L+ G P++NTP W+ + + P
Sbjct: 365 KTLKKEGKLDKYGRPNENTPADWSKSYIDYSDP 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,736
Number of Sequences: 5004
Number of extensions: 46466
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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