Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f24
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 33 0.24
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 31 0.72
11_01_0051 + 391254-391343,391460-391862,392345-392352,393627-39... 31 0.95
12_01_0052 + 433203-433292,433409-433815,434435-434447,437081-43... 30 1.3
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 2.2
03_01_0574 + 4243019-4244284 29 2.9
03_06_0400 + 33673429-33673560,33674611-33674788,33674933-336751... 28 6.7
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 28 6.7
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 27 8.9
04_01_0255 - 3395548-3396129,3396203-3397834 27 8.9
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +1
Query: 112 VKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDH 291
V DG + GS + T+ DLN + + + +L L S G+ K+W
Sbjct: 121 VSFSPDGRCLASGSGDTTVRFWDLNTQTPLFTCKGGSLNSCILVLISSVGQSCHKNWVLC 180
Query: 292 ALWWPTRNKWLSRPK 336
W P N +S K
Sbjct: 181 IAWSPDGNHLVSGSK 195
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +1
Query: 136 IVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRN 315
+V +N+TI+ + + RT G + +K S+ F + + LWW +
Sbjct: 71 VVNHAQYNVTIHWHGIRQFRTGWADGPEFVTQCPIKPGGSYKYRFTIEGQEGTLWWHAHS 130
Query: 316 KWL 324
WL
Sbjct: 131 SWL 133
>11_01_0051 +
391254-391343,391460-391862,392345-392352,393627-393704,
395371-395763
Length = 323
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +1
Query: 136 IVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRN 315
++ G +N+T++ + + RT G ++ ++ +S+ F + LWW +
Sbjct: 69 LINRGRYNMTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWWHAHS 128
Query: 316 KWL 324
WL
Sbjct: 129 SWL 131
>12_01_0052 +
433203-433292,433409-433815,434435-434447,437081-437473
Length = 300
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +1
Query: 136 IVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRN 315
++ G +N+T++ + + RT G ++ ++ +S+ F + LWW +
Sbjct: 69 LINRGRYNVTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWWHAHS 128
Query: 316 KWL 324
WL
Sbjct: 129 SWL 131
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 310 RNKWLSRPKHT-LDQYGVHADAALHFTPMHKPLRIQLPDL 426
R + +S+P +T + Q+ H AL F P HK R+ DL
Sbjct: 1543 RMQAMSKPTYTAITQHAKHGKPALVFVPTHKHARLTAVDL 1582
>03_01_0574 + 4243019-4244284
Length = 421
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 112 VKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGV 234
V L DG+ + SWN VT+L EK+T + GD + G+
Sbjct: 162 VVRLEDGDYLELVSWNPNWAVTEL-EKKTAALTGDANANGI 201
>03_06_0400 +
33673429-33673560,33674611-33674788,33674933-33675100,
33675207-33675382,33675508-33675666,33676093-33676230,
33676294-33676355,33676509-33676644,33677174-33677268,
33677520-33677635,33677716-33677845,33677938-33677992,
33678065-33678205
Length = 561
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 133 EIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWW 303
E++ S + Y+ N+ V G + ++LK +E GK + DW+ + L W
Sbjct: 166 EVIAGPSHGINHYMQSGNKSMLPVTLGRVPPSHLVLKDSEVSGKHAQIDWNANKLKW 222
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 139 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKKDWS 285
+G G+++++I D + GD H+GG ++ E F K KK +S
Sbjct: 229 LGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYS 279
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 406 RIQLPDLRFIDCKIDFSIDTFSAVIQLCKNLGIRHSEELSLCYP-LEASHLKQNYQNLKE 582
R++L D ID I+ +D +A +++ + +G+RH E++ + P L LK+ Y +L
Sbjct: 265 RLELSD---IDGLINLRLDA-AATLEVLRLIGLRHMEQMEVDAPGLRELVLKRIYAHLMA 320
Query: 583 A 585
A
Sbjct: 321 A 321
>04_01_0255 - 3395548-3396129,3396203-3397834
Length = 737
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 283 SDHALWWPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPL 405
+DH L W RN W+ PK +Y A A F + K L
Sbjct: 630 ADHLLQWLHRNYWVKFPK---SEYSYEAKFAQMFPKLRKIL 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,602
Number of Sequences: 37544
Number of extensions: 326566
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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