Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f24
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...   163   1e-40
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.   163   1e-40
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score =  163 bits (395), Expect = 1e-40
 Identities = 71/136 (52%), Positives = 99/136 (72%)
 Frame = +1

Query: 121 LADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALW 300
           L +G  + DG W L I VTDLN +R++ V G++++GG+ML+L      E  +DWSDHALW
Sbjct: 4   LVEGTSIIDGKWQLPILVTDLNIQRSISVLGNLNVGGLMLELVSECDVE--RDWSDHALW 61

Query: 301 WPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVI 480
           WP + +WL   + TLDQ G+ A+  L FTPMHK  RIQLPD++ ID ++DFS+++F A  
Sbjct: 62  WPEKRRWLQHTRSTLDQNGITAETQLEFTPMHKEARIQLPDMQMIDARVDFSVNSFKATK 121

Query: 481 QLCKNLGIRHSEELSL 528
           +LC++LGIR+SEELSL
Sbjct: 122 KLCRDLGIRYSEELSL 137


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score =  163 bits (395), Expect = 1e-40
 Identities = 71/136 (52%), Positives = 99/136 (72%)
 Frame = +1

Query: 121 LADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALW 300
           L +G  + DG W L I VTDLN +R++ V G++++GG+ML+L      E  +DWSDHALW
Sbjct: 4   LVEGTSIIDGKWQLPILVTDLNIQRSISVLGNLNVGGLMLELVSECDVE--RDWSDHALW 61

Query: 301 WPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVI 480
           WP + +WL   + TLDQ G+ A+  L FTPMHK  RIQLPD++ ID ++DFS+++F A  
Sbjct: 62  WPEKRRWLQHTRSTLDQNGITAETQLEFTPMHKEARIQLPDMQMIDARVDFSVNSFKATK 121

Query: 481 QLCKNLGIRHSEELSL 528
           +LC++LGIR+SEELSL
Sbjct: 122 KLCRDLGIRYSEELSL 137


>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
            C14B4.2 protein.
          Length = 1776

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 118  MLADGEIVGDGSWNLTIYVTDLNEK 192
            + A G ++GD S NLTI+ T+++ K
Sbjct: 1244 LTASGHVLGDSSTNLTIHSTNIHSK 1268


>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
            C14B4.2 protein.
          Length = 1776

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 118  MLADGEIVGDGSWNLTIYVTDLNEK 192
            + A G ++GD S NLTI+ T+++ K
Sbjct: 1244 LTASGHVLGDSSTNLTIHSTNIHSK 1268


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 323 SPDQNTPWTSTEFTRTPPYTSRPCTNH 403
           S  ++  W+  +  R PP  SRPC  H
Sbjct: 147 STGKSVQWSQCDARRRPPEKSRPCNQH 173


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 323 SPDQNTPWTSTEFTRTPPYTSRPCTNH 403
           S  ++  W+  +  R PP  SRPC  H
Sbjct: 481 STGKSVQWSQCDARRRPPEKSRPCNQH 507


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
            C27A7.4 protein.
          Length = 1403

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 466  FSAVIQLCKNLGIRHSEELS-LCYPLEASHLKQNYQNLKEAKRIKNTQA 609
            FS  +QLCKN  +R S++ + L  P      K +  N++E K++  T A
Sbjct: 1095 FSGAVQLCKNRNVRVSDKFAELMTP-----TKDDMPNVQERKQVLETVA 1138


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 136 IVGDGSWNLTIYVTDLNEKRTMVVKGD-MHIGGVMLKLTESFGKEF 270
           IVG  ++    YV  LNEKR     G  + + G  +  T+SF +EF
Sbjct: 491 IVGGATYEEAAYVRSLNEKRMQGYGGPAVVLAGSSMLNTKSFLEEF 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,253
Number of Sequences: 27780
Number of extensions: 270358
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)