Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29f15
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 1.4
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 27 1.9
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 27 1.9
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 25 5.7
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 5.7
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 7.5
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 25 7.5
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 25 10.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 10.0
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 456 NKNTYLSPPNKMLRHRNYPKNVRGPLTPASKLVLHPS 346
NK ++PP L+H + V GP T A PS
Sbjct: 34 NKTVTITPPKHGLKHSRHKNRVNGPRTFAFDECFAPS 70
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 167 GHMSHILSNTFFHINESTIIKAGNVTFGQLLVNQK--NELLTLFSIGIHKTLL 319
GH +H+ + +FFH +ES K V +N K N L+T + + LL
Sbjct: 154 GHKNHLENRSFFHDSESDNFK---VVLSNCAINSKEDNNLVTEDRVNLGAKLL 203
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 186 KICDMCPTRQYFCKPHHEAQLSSPFTSEFVIYY 88
++CD C + +Y PH E + P+ YY
Sbjct: 98 RLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYY 130
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 134 KHNYRLPLRVNLLFITINTIPLLVVRHVTSV 42
++N RLP N ++ TI +L V HVT V
Sbjct: 107 RNNERLPYLCNAIWSFYTTIVILAVLHVTHV 137
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 115 GRR*LCFVVWLTKILSCWAHVAYFVKYVFSY 207
G + LC+++ + I + AHV+Y Y F Y
Sbjct: 197 GGKLLCWIIGVIFIAAFIAHVSYLSFYSFDY 227
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 136 RSTTIVSLYE*ICYLLLSILFHY 68
R T+++SL +CYL+ +L+H+
Sbjct: 163 RHTSVISLIA-LCYLVFIVLYHF 184
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 209 LYEKTYLTKYATCAQQDNIFVSHTTKHNYRLPLRVNLLFIT 87
L K + K A Q + + ++T NY +PL + L FI+
Sbjct: 435 LSSKFHFKKEILIASQLSSHLDYSTFKNYLMPLAITLHFIS 475
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 101 LLFITINTIPLLVVRHVTSVVIIYLSKY 18
LL + INT PL + +I+++KY
Sbjct: 48 LLHVRINTSPLFIKTTTRPTALIHITKY 75
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 24.6 bits (51), Expect = 10.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 110 VKGDDSCASWCGL-QKYCLVGHMSHILSNTFFHINESTIIKAGN----VTFGQLLVNQKN 274
VKGDD W G+ KY + ++ S +N S I+ + T +L+N+
Sbjct: 3 VKGDD--VKWKGIPMKYIALVLLTVQNSALILTLNYSRIMPGYDDKRYFTSTAVLLNELI 60
Query: 275 ELLTLFSIGIHK 310
+L+ FS+G H+
Sbjct: 61 KLVVCFSVGYHQ 72
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 133 STTIVSLYE*ICYLLLSILFHYSLF 59
ST + LYE YL++ FHYS+F
Sbjct: 590 STPMSKLYE--DYLVMLFAFHYSMF 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,549
Number of Sequences: 5004
Number of extensions: 50988
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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