Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f15
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    29   2.5  
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957...    27   7.7  

>05_06_0102 -
           25589011-25589181,25589269-25589496,25589589-25589933,
           25590406-25590777,25590957-25591049,25591150-25591401,
           25592019-25593224
          Length = 888

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 360 QVYLRVLKDLVHFWDNYDGAAFY 428
           Q+    L  L+HFWD +DG   Y
Sbjct: 561 QIACSTLDGLIHFWDPFDGLLMY 583


>08_02_0582 +
           18993816-18993890,18994050-18994446,18995645-18995748,
           18995863-18996004,18996118-18996237,18996341-18996465,
           18996903-18997061,18997161-18997323,18997420-18997545,
           18997628-18997711,18997761-18998173,18998199-18998273,
           18998463-18998663,18998862-18998971,18999072-18999156,
           18999365-18999493,18999596-18999701,18999825-18999913,
           19000064-19000366
          Length = 1001

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
 Frame = -3

Query: 530 QTEFYFISYNVQIYMSLLL-----DLTSKSIKTHIYHRQIKCCAIVIIPKMYEVL*HPQV 366
           Q  FYF+  N+QI ++ LL      + S S+ ++IY          ++    E +  P++
Sbjct: 441 QFVFYFLYINLQIVLAFLLASFFSSVKSASVISYIYVFGSSLLGEALLQLFIEDITFPRI 500

Query: 365 --NLYYILPAVIYLRCRSEEF 309
             N+Y+IL    +  C  E++
Sbjct: 501 ILNIYWILIKNYHSTCLLEQW 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,893
Number of Sequences: 37544
Number of extensions: 267132
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)