Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f15
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.91 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 200 KTYLTKYATCAQQDNIFVSHTTKHNYRLP 114
           KT  +K   C  QD+    +T KH  R+P
Sbjct: 438 KTCNSKTKCCFAQDDGLCPYTLKHKIRVP 466


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 360 VLHPSRCYLSKMSFR 316
           +LHPSRC   K+++R
Sbjct: 15  LLHPSRCTQGKVNYR 29


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 360 VLHPSRCYLSKMSFR 316
           +LHPSRC   K+++R
Sbjct: 15  LLHPSRCTQGKVNYR 29


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 142 WLTKILSCWAHVAYFV 189
           + T +LSCW ++ Y +
Sbjct: 102 YATCVLSCWTNIYYII 117


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 142 WLTKILSCWAHVAYFV 189
           + T +LSCW ++ Y +
Sbjct: 155 YATCVLSCWTNIYYII 170


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 429 NKMLRHRNYPKNVRGPLT 376
           NK   H NYP +  G LT
Sbjct: 582 NKRSIHNNYPVHTFGRLT 599


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,336
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)