Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29f12
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0135 + 1039018-1041474                                           29   2.9  
01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158     29   2.9  
05_01_0231 - 1730428-1730817                                           29   3.8  
07_01_0168 + 1179292-1180354,1180880-1180923                           28   6.6  
03_02_0858 + 11848128-11848287,11848906-11848973,11849281-118494...    28   6.6  

>06_01_0135 + 1039018-1041474
          Length = 818

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 339 DSVCRYQTPSSHINLVSPFYYRRGPCV*IDPLFVLRY*YMLISLACCLLV 190
           D+V  ++  +S IN +S +Y+   P V   P F +   ++L  +  C+ V
Sbjct: 329 DAVAVFEVMNSEINFLSEYYHSVVPVVLASPFFFVANYFLLPVVVLCVCV 378


>01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158
          Length = 272

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 597 PALKKGQESPLQYYLPPPAWCRKTVTEVTAKMQCELSPSKDW 722
           PAL+ G   P ++ L PP W +  V  + +   C+   ++ W
Sbjct: 106 PALRAGNVQPYEFIL-PPTWKQTRVANILSGNYCQPKCAEPW 146


>05_01_0231 - 1730428-1730817
          Length = 129

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 375 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 518
           GD  R C  K+   +  LH L+  V   +H  G I+ +  +SLQ+I D
Sbjct: 80  GDRNRLCGEKLKKRY--LHELLRDVEPDDHKHGGILQRCKSSLQEIVD 125


>07_01_0168 + 1179292-1180354,1180880-1180923
          Length = 368

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 FIHTAHGDSKMDSRDLCAMMVFDNDR 332
           F+HT HGD +M+ + L    +++ DR
Sbjct: 316 FLHTIHGDYRMELKSLQISKLWEKDR 341


>03_02_0858 +
           11848128-11848287,11848906-11848973,11849281-11849403,
           11850796-11851128,11851199-11851321,11851414-11851632
          Length = 341

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 709 GDNSHCILAVTSVTVLRHQAGGGR 638
           G+  HCI  V+ V+++   AGGGR
Sbjct: 293 GEGFHCIRTVSDVSLVLDAAGGGR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,762,607
Number of Sequences: 37544
Number of extensions: 431400
Number of successful extensions: 903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)